fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G01200.2 GGGVIDLGLSLRTIQH at 30/143 in AT2G01200.1
QGAYATLALQLNDMFD at 123/143 in AT2G01200.1
GGGVIDLGLSLRTIQH at 30/191 in AT2G01200.2
QGAYATLALQLNDMFG at 123/191 in AT2G01200.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm054444 DDGIIDLGLSLGTVRH in 30/190 AT2G01200.2 1st_1st 0.455470737 Ia
HGGYSSLALQLEDMFG in 118/190
Gm029002 DDGIIDLGLSLGTVQH in 30/191 AT2G01200.2 not_1st 0.452926208 II
HGGYSSLALQLEDMFG in 119/191
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G01200.2     MDPNTPADFFKGSSKFHTYYSQTKKGGGVIDLGLSLRTIQHETYLPPARMIGLDGYGE-L
gm054444_Glyma2 MESNT-SRFLLNSSTLHSVFYQEKQDDGIIDLGLSLGTVRHEAYHSSANL-----YDEEL
gm029002_Glyma1 MESNT-SSFLLNSSTLHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSANL-----YDEDL
                *:.** : *: .**.:*: : * *:..*:******* *::**:* ..*.:     *.* *

AT2G01200.2     IDWSQPSYNSITQLKSEDTGHQRLA-QGYYNNEGE---SRGKYAYVKVNLDGLVVGRKVC
gm054444_Glyma2 MDWPHSNLN----LKNSRTMHSRSV-HQNFDEEIEGVQSNERWAYVKVNMDGVTIGRKIC
gm029002_Glyma1 MDWPHSNLN----LKNSSTMHSRSAHHQNFDEEIEGVQSNERWAYVKVNMDGVTIGRKIC
                :**.:.. *    **.. * *.* . :  :::* *   *. ::******:**:.:***:*

AT2G01200.2     LVDQGAYATLALQLNDMFGMQTVSGLRLFQTESEFSLVYRDREGIWRNVGDVPWKEFVES
gm054444_Glyma2 VLDHGGYSSLALQLEDMFGSQSVSGLRLFQSGSEYSLFYKDRQDNWRPVGDVPWKEFIEC
gm029002_Glyma1 VLDHGGYSSLALQLEDMFGSHSVSGLRLFQSGSEYSLFYKDRQDNWRPVGDVPWKEFIEC
                ::*:*.*::*****:**** ::********: **:**.*:**:. ** *********:*.

AT2G01200.2     VDRMRIARRNDALLPF-----
gm054444_Glyma2 VKRLRIARKNSGIVSYSSRCT
gm029002_Glyma1 VKRLRIARKNSGIVSCSSRYT
                *.*:****:*..::.
BoxShade v3.31 C (beta, 970507) Output
AT2G01200.2     M D P N T P A D F F K G S S K F H T Y Y S Q T K K G G G V I D L G L S L R T I Q H E T Y L P P A R M I G L D G Y G E - L
gm054444_Glyma2    M E S N T - S R F L L N S S T L H S V F Y Q E K Q D D G I I D L G L S L G T V R H E A Y H S S A N L - - - - - Y D E E L
gm029002_Glyma1    M E S N T - S S F L L N S S T L H S V F Y Q D K Q D D G I I D L G L S L G T V Q H E A Y H S S A N L - - - - - Y D E D L
 
AT2G01200.2     I D W S Q P S Y N S I T Q L K S E D T G H Q R L A - Q G Y Y N N E G E - - - S R G K Y A Y V K V N L D G L V V G R K V C
gm054444_Glyma2    M D W P H S N L N - - - - L K N S R T M H S R S V - H Q N F D E E I E G V Q S N E R W A Y V K V N M D G V T I G R K I C
gm029002_Glyma1    M D W P H S N L N - - - - L K N S S T M H S R S A H H Q N F D E E I E G V Q S N E R W A Y V K V N M D G V T I G R K I C
 
AT2G01200.2     L V D Q G A Y A T L A L Q L N D M F G M Q T V S G L R L F Q T E S E F S L V Y R D R E G I W R N V G D V P W K E F V E S
gm054444_Glyma2    V L D H G G Y S S L A L Q L E D M F G S Q S V S G L R L F Q S G S E Y S L F Y K D R Q D N W R P V G D V P W K E F I E C
gm029002_Glyma1    V L D H G G Y S S L A L Q L E D M F G S H S V S G L R L F Q S G S E Y S L F Y K D R Q D N W R P V G D V P W K E F I E C
 
AT2G01200.2     V D R M R I A R R N D A L L P F - - - - -
gm054444_Glyma2    V K R L R I A R K N S G I V S Y S S R C T
gm029002_Glyma1    V K R L R I A R K N S G I V S C S S R Y T
 
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