fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G04038.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm035172 not found in 214aa AT3G30530.1 1st_not 0.489510489 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G04038.1     MIPAEINGYFQYLSPE----------YNVINMPSSPTSSLNYLNDLIINNNNYSSSS---
gm035172_Glyma1 MQTKEVVSSLSYLLPSNPCSYPPSNNYTSMIQNSIPTFQFQRFSNQIYGCNNSHNTTYQV
                * . *: . :.** *.          *. :   * ** .:: :.: * . **  .::   

AT2G04038.1     ---NSQDLMISNNSTSDEDHHQSIMVLDERKQRRMLSNRESARRSRMRKQRHLDELWSQV
gm035172_Glyma1 PDFSPQSSCISSNSTSDEADDQNLSLINERKHRRMLSNRESARRSRMRKQKHLDELWSQV
                   ..*.  **.****** ..*.: :::***:******************:*********

AT2G04038.1     IRLRNENNCLIDKLNRVSETQNCVLKENSKLKEEASDLRQLVCELK--SNKNNNNSFPRE
gm035172_Glyma1 VWLRNENHQLIDKLNHVSETHDQVLQENSQLKEEASELRQMIRDMQIHSPCGGPNSFITP
                : *****: ******:****:: **:***:******:***:: :::  *  .. ***   

AT2G04038.1     FEDN------------------------------
gm035172_Glyma1 LEDHDVDHVPSAYLRSDDSSNQFNSCNNNMDLLG
                :**:
BoxShade v3.31 C (beta, 970507) Output
AT2G04038.1     M I P A E I N G Y F Q Y L S P E - - - - - - - - - - Y N V I N M P S S P T S S L N Y L N D L I I N N N N Y S S S S - - -
gm035172_Glyma1    M Q T K E V V S S L S Y L L P S N P C S Y P P S N N Y T S M I Q N S I P T F Q F Q R F S N Q I Y G C N N S H N T T Y Q V
 
AT2G04038.1     - - - N S Q D L M I S N N S T S D E D H H Q S I M V L D E R K Q R R M L S N R E S A R R S R M R K Q R H L D E L W S Q V
gm035172_Glyma1    P D F S P Q S S C I S S N S T S D E A D D Q N L S L I N E R K H R R M L S N R E S A R R S R M R K Q K H L D E L W S Q V
 
AT2G04038.1     I R L R N E N N C L I D K L N R V S E T Q N C V L K E N S K L K E E A S D L R Q L V C E L K - - S N K N N N N S F P R E
gm035172_Glyma1    V W L R N E N H Q L I D K L N H V S E T H D Q V L Q E N S Q L K E E A S E L R Q M I R D M Q I H S P C G G P N S F I T P
 
AT2G04038.1     F E D N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm035172_Glyma1    L E D H D V D H V P S A Y L R S D D S S N Q F N S C N N N M D L L G
 
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