fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G16720.1 EKIGPDLNLELRISPP at 188/269 in AT2G16720.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt018632 QERCPDLNLELRISLP in 186/268 AT4G38620.1 1st_not 0.597609561 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G16720.1     MGRSPCCEKEHMNKGAWTKEEDERLVSYIKSHGEGCWRSLPRAAGLLRCGKSCRLRWINY
pt018632_POPTR_ MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRTHGEGCWRSLPKAAGLLRCGKSCRLRWINY
                ********* * **********:**::**::**********:******************

AT2G16720.1     LRPDLKRGNFTHDEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLLSKG
pt018632_POPTR_ LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRG
                ***********.:********************.******************:****.:*

AT2G16720.1     IDPATHRGINE------AKISDLKKTKDQIVKDVSFVTKFEETDKSGDQKQNKYIR-NGL
pt018632_POPTR_ IDPATHRPLNEPAQEASTTISFSTTTS---VKEESLSSVKEESNKE------KIISAAAF
                ******* :**      :.**  ..*.   **: *: :  **::*.      * *   .:

AT2G16720.1     VCKEERVVVEEKIGPDLNLELRISPPWQNQRE----------ISTCTASRFYMENDMECS
pt018632_POPTR_ ICKEEKTPVQERC-PDLNLELRISLPCQNQPDRHQAFKTGGSTSLCFACSLGLQNSKDCS
                :****:. *:*:  ********** * *** :           * * *. : ::*. :**

AT2G16720.1     SETVKCQTENSSSISYSSIDISSSNVGYDFLGLKTRILDFRSLEMK
pt018632_POPTR_ CSVIVGTIGSSSS--------AGSKTGYDFLGMKSGVLDYRGLEMK
                ...:     .***        :.*:.******:*: :**:*.****
BoxShade v3.31 C (beta, 970507) Output
AT2G16720.1     M G R S P C C E K E H M N K G A W T K E E D E R L V S Y I K S H G E G C W R S L P R A A G L L R C G K S C R L R W I N Y
pt018632_POPTR_    M G R S P C C E K A H T N K G A W T K E E D D R L I A Y I R T H G E G C W R S L P K A A G L L R C G K S C R L R W I N Y
 
AT2G16720.1     L R P D L K R G N F T H D E D E L I I K L H S L L G N K W S L I A A R L P G R T D N E I K N Y W N T H I K R K L L S K G
pt018632_POPTR_    L R P D L K R G N F T E E E D E L I I K L H S L L G N K W S L I A G R L P G R T D N E I K N Y W N T H I R R K L L N R G
 
AT2G16720.1     I D P A T H R G I N E - - - - - - A K I S D L K K T K D Q I V K D V S F V T K F E E T D K S G D Q K Q N K Y I R - N G L
pt018632_POPTR_    I D P A T H R P L N E P A Q E A S T T I S F S T T T S - - - V K E E S L S S V K E E S N K E - - - - - - K I I S A A A F
 
AT2G16720.1     V C K E E R V V V E E K I G P D L N L E L R I S P P W Q N Q R E - - - - - - - - - - I S T C T A S R F Y M E N D M E C S
pt018632_POPTR_    I C K E E K T P V Q E R C - P D L N L E L R I S L P C Q N Q P D R H Q A F K T G G S T S L C F A C S L G L Q N S K D C S
 
AT2G16720.1     S E T V K C Q T E N S S S I S Y S S I D I S S S N V G Y D F L G L K T R I L D F R S L E M K
pt018632_POPTR_    C S V I V G T I G S S S S - - - - - - - - A G S K T G Y D F L G M K S G V L D Y R G L E M K
 
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