fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G17180.1 TTLGCSLDLRLGL at 262/270 in AT2G17180.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt021511 AKEGCGLDLNLPAPME in 268/297 AT4G35280.1 1st_not 0.466918714 II
SSYSSGLTLDLRLCL in 288/297
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G17180.1     MSNTSNSDPNSDIPFASSNVTLPS--YNQNPRRKRTKLTNNEVG--SSSSSPRPKPVTQP
pt021511_POPTR_ -MTSHNTDPDPDFCLPSSS-SIPTTYHHQNPRKKRTRLIKIEPSLLPSSTISRPKYYNKP
                  .: *:**:.*: :.**. ::*:  ::****:***:* : * .  .**: .***  .:*

AT2G17180.1     DPDASQIARPCTECGKQFGSLKALFGHMRCHPERQWRGINPPSNFKRRIN----SNAASS
pt021511_POPTR_ DPSAPKITRPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNYRRPVSPIDQPVSIAN
                **.*.:*:***:****:* * *********************.*::* :.    . : :.

AT2G17180.1     SSSWDP--SEEEHNIASCLLMMANGDVPTRSSEVEERFECDGCKKVFGSHQALGGHRATH
pt021511_POPTR_ PTNWEDMMTAEDHEVASCLLMLADSDGAAMLEVNCTRFECSSCRKVFGSHQALGGHRASH
                .:.*:   : *:*::******:*:.* .:  .    ****..*:**************:*

AT2G17180.1     KDVKGCFA-----NKNITEDPPPPPPQEIVDQDKGKSVKLVSGMNHRCNICSRVFSSGQA
pt021511_POPTR_ KNVKGCFALTRSDGCEVVEDHGGSGDVKENVEDNSKAL-LVLG--HKCSICLRMFPSGQA
                *:******     . ::.**   .   :   :*:.*:: ** *  *:*.** *:*.****

AT2G17180.1     LGGHMRCHWEKDQEENQVR-------------GIDLNVPAA----TSSDTTLGCSLDLRL
pt021511_POPTR_ LGGHMRCHWEKGEENSSSMNQGLHFLTAKEGCGLDLNLPAPMEDESSSSYSSGLTLDLRL
                ***********.:*:..               *:***:**.    :**. : * :*****

AT2G17180.1     GL
pt021511_POPTR_ CL
                 *
BoxShade v3.31 C (beta, 970507) Output
AT2G17180.1     M S N T S N S D P N S D I P F A S S N V T L P S - - Y N Q N P R R K R T K L T N N E V G - - S S S S S P R P K P V T Q P
pt021511_POPTR_    - M T S H N T D P D P D F C L P S S S - S I P T T Y H H Q N P R K K R T R L I K I E P S L L P S S T I S R P K Y Y N K P
 
AT2G17180.1     D P D A S Q I A R P C T E C G K Q F G S L K A L F G H M R C H P E R Q W R G I N P P S N F K R R I N - - - - S N A A S S
pt021511_POPTR_    D P S A P K I T R P C S E C G K K F W S W K A L F G H M R C H P E R Q W R G I N P P P N Y R R P V S P I D Q P V S I A N
 
AT2G17180.1     S S S W D P - - S E E E H N I A S C L L M M A N G D V P T R S S E V E E R F E C D G C K K V F G S H Q A L G G H R A T H
pt021511_POPTR_    P T N W E D M M T A E D H E V A S C L L M L A D S D G A A M L E V N C T R F E C S S C R K V F G S H Q A L G G H R A S H
 
AT2G17180.1     K D V K G C F A - - - - - N K N I T E D P P P P P P Q E I V D Q D K G K S V K L V S G M N H R C N I C S R V F S S G Q A
pt021511_POPTR_    K N V K G C F A L T R S D G C E V V E D H G G S G D V K E N V E D N S K A L - L V L G - - H K C S I C L R M F P S G Q A
 
AT2G17180.1     L G G H M R C H W E K D Q E E N Q V R - - - - - - - - - - - - - G I D L N V P A A - - - - T S S D T T L G C S L D L R L
pt021511_POPTR_    L G G H M R C H W E K G E E N S S S M N Q G L H F L T A K E G C G L D L N L P A P M E D E S S S S Y S S G L T L D L R L
 
AT2G17180.1     G L
pt021511_POPTR_    C L
 
0