fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G17180.1 TTLGCSLDLRLGL at 262/270 in AT2G17180.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt021511 AKEGCGLDLNLPAPME in 268/297 AT4G35280.1 1st_not 0.466918714 II
SSYSSGLTLDLRLCL in 288/297
Pt019083 KEGSVLDLNLPAPVEDES in 290/318 AT4G35280.1 not_not 0.455576559 III
SFYSSGLTLDLRLGL in 309/318
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G17180.1     MSNTSNSDPNSDIPFASSNVTLPS--YNQNPRRKRTKLTNNEVG--SSSSSPRPKPVTQP
pt019083_POPTR_ MTN-HNTDPDPDFGLPSSS-SIPTTYYHQNPRKKRTKLIKIEPSLLPSSTISKPKYYKKP
pt021511_POPTR_ MTS-HNTDPDPDFCLPSSS-SIPTTYHHQNPRKKRTRLIKIEPSLLPSSTISRPKYYNKP
                *:.  *:**:.*: :.**. ::*:  ::****:***:* : * .  .**: .:**  .:*

AT2G17180.1     DPDASQIARPCTECGKQFGSLKALFGHMRCHPERQWRGINPPSNFKRRINSN----AASS
pt019083_POPTR_ DPSAPKITRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNYRRPVSPI-QLLSIVS
pt021511_POPTR_ DPSAPKITRPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNYRRPVSPIDQPVSIAN
                **.*.:*:***:****:* * *********************.*::* :..     :  .

AT2G17180.1     SSSWDP--SEEEHNIASCLLMMANGD--------------VPTRSSEVEE-------RFE
pt019083_POPTR_ STNWEDMLTAEDHEVASCLLMLANSDGAIMLERNEFGGGVVAGSSHQARDHDQVNCTRVE
pt021511_POPTR_ PTNWEDMMTAEDHEVASCLLMLADSDGAAMLE---------------------VNCTRFE
                .:.*:   : *:*::******:*:.*                               *.*

AT2G17180.1     CDGCKKVFGSHQALGGHRATHKDVKGCFANK-----NITEDPPPPPPQEIVDQDKGKSVK
pt019083_POPTR_ CSSCEKVFGSHLALGGRSASHKNVKGCFAIKRNDGCEVVEDHSGSGDVKENVEDNSKAL-
pt021511_POPTR_ CSSCRKVFGSHQALGGHRASHKNVKGCFALTRSDGCEVVEDHGGSGDVKENVEDNSKAL-
                *..*.****** ****: *:**:****** .     ::.**   .   :   :*:.*:: 

AT2G17180.1     LVSGMNHRCNICSRVFSSGQALGGHMRCHWEKDQE--------------ENQVRGIDLNV
pt019083_POPTR_ MVLG--HRCSICSRVFPSGQALGGHKRCHWEKGEEISSSINQGGLHVLTEKEGSVLDLNL
pt021511_POPTR_ LVLG--HKCSICLRMFPSGQALGGHMRCHWEKGEENSSSMNQ-GLHFLTAKEGCGLDLNL
                :* *  *:*.** *:*.******** ******.:*               ::   :***:

AT2G17180.1     PAA----TSSDTTLGCSLDLRLGL
pt019083_POPTR_ PAPVEDESSSFYSSGLTLDLRLGL
pt021511_POPTR_ PAPMEDESSSSYSSGLTLDLRLCL
                **.    :**  : * :***** *
BoxShade v3.31 C (beta, 970507) Output
AT2G17180.1     M S N T S N S D P N S D I P F A S S N V T L P S - - Y N Q N P R R K R T K L T N N E V G - - S S S S S P R P K P V T Q P
pt019083_POPTR_    M T N - H N T D P D P D F G L P S S S - S I P T T Y Y H Q N P R K K R T K L I K I E P S L L P S S T I S K P K Y Y K K P
pt021511_POPTR_    M T S - H N T D P D P D F C L P S S S - S I P T T Y H H Q N P R K K R T R L I K I E P S L L P S S T I S R P K Y Y N K P
 
AT2G17180.1     D P D A S Q I A R P C T E C G K Q F G S L K A L F G H M R C H P E R Q W R G I N P P S N F K R R I N S N - - - - A A S S
pt019083_POPTR_    D P S A P K I T R P C T E C G K K F W S W K A L F G H M R C H P E R Q W R G I N P P P N Y R R P V S P I - Q L L S I V S
pt021511_POPTR_    D P S A P K I T R P C S E C G K K F W S W K A L F G H M R C H P E R Q W R G I N P P P N Y R R P V S P I D Q P V S I A N
 
AT2G17180.1     S S S W D P - - S E E E H N I A S C L L M M A N G D - - - - - - - - - - - - - - V P T R S S E V E E - - - - - - - R F E
pt019083_POPTR_    S T N W E D M L T A E D H E V A S C L L M L A N S D G A I M L E R N E F G G G V V A G S S H Q A R D H D Q V N C T R V E
pt021511_POPTR_    P T N W E D M M T A E D H E V A S C L L M L A D S D G A A M L E - - - - - - - - - - - - - - - - - - - - - V N C T R F E
 
AT2G17180.1     C D G C K K V F G S H Q A L G G H R A T H K D V K G C F A N K - - - - - N I T E D P P P P P P Q E I V D Q D K G K S V K
pt019083_POPTR_    C S S C E K V F G S H L A L G G R S A S H K N V K G C F A I K R N D G C E V V E D H S G S G D V K E N V E D N S K A L -
pt021511_POPTR_    C S S C R K V F G S H Q A L G G H R A S H K N V K G C F A L T R S D G C E V V E D H G G S G D V K E N V E D N S K A L -
 
AT2G17180.1     L V S G M N H R C N I C S R V F S S G Q A L G G H M R C H W E K D Q E - - - - - - - - - - - - - - E N Q V R G I D L N V
pt019083_POPTR_    M V L G - - H R C S I C S R V F P S G Q A L G G H K R C H W E K G E E I S S S I N Q G G L H V L T E K E G S V L D L N L
pt021511_POPTR_    L V L G - - H K C S I C L R M F P S G Q A L G G H M R C H W E K G E E N S S S M N Q - G L H F L T A K E G C G L D L N L
 
AT2G17180.1     P A A - - - - T S S D T T L G C S L D L R L G L
pt019083_POPTR_    P A P V E D E S S S F Y S S G L T L D L R L G L
pt021511_POPTR_    P A P M E D E S S S S Y S S G L T L D L R L C L
 
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