fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G17950.1 LEHRRTLPLFPMHGED at 253/292 in AT2G17950.1
VRPCASLELRLN at 285/292 in AT2G17950.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt002935 AEKIETLPLFPMHGED in 205/264 AT2G17950.1 1st_1st 0.284046692 Ib
TTSRTSLELSLYSYNG in 249/264
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G17950.1     MEPPQHQHHHHQADQESGNNNNNKSGSGGYTCRQTSTRWTPTTEQIKILKELYYNNAIRS
pt002935_POPTR_ MEPQQQQHQ----NQQQPNEDNNGGAKGNFICRQTSTRWTPTTDQIRILKELYYIKGVRS
                *** *:**:    :*:. *::** ...*.: ************:**:******* :.:**

AT2G17950.1     PTADQIQKITARLRQFGKIEGKNVFYWFQNHKARERQKKRFNGTNMTTPSSSPNSVMMAA
pt002935_POPTR_ PNGAEIQQISARLRKYGKIEGKNVFYWFQNHKARERQKKRF------------------T
                *.. :**:*:****::*************************                  :

AT2G17950.1     NDHYHPLLHHHHGVPMQ-----RPANSVNVKLNQDHHLYHHNKPYPSFNNGNLNHASSGT
pt002935_POPTR_ ND-----------VPTQQRTTLKP---------EDYYSYKYSG---SNNNPGFSSASSSS
                **           ** *     :*         :*:: *::.    * ** .:. ***.:

AT2G17950.1     ECGVVNASNGYMSSHVYGS--MEQ----DCS----------MNYNNVGGGWANMDHHYSS
pt002935_POPTR_ NTGAVTV--GQADNYGYGSVTMQEKKNWDCSVPAGGESMNNINYGSRGGIYP-----YSS
                : *.*..  *  ..: ***  *::    ***          :**.. ** :.     ***

AT2G17950.1     APYNFFDRAKPLFGLEGHQEEEECGGDAYLEHRRTLPLFPMHGED-----HING------
pt002935_POPTR_ S-YTVFD-----------QDQEAA------EKIETLPLFPMHGEDISTSFNINNVNPDFY
                : *..**           *::* .      *: .***********     :**.      

AT2G17950.1     -----GSGAIWKYGQSEVRPCASLELRLN---------
pt002935_POPTR_ YSSWYGSD---DYGNATTSR-TSLELSLYSYNGQQQDY
                     **.   .**:: .   :**** *
BoxShade v3.31 C (beta, 970507) Output
AT2G17950.1     M E P P Q H Q H H H H Q A D Q E S G N N N N N K S G S G G Y T C R Q T S T R W T P T T E Q I K I L K E L Y Y N N A I R S
pt002935_POPTR_    M E P Q Q Q Q H Q - - - - N Q Q Q P N E D N N G G A K G N F I C R Q T S T R W T P T T D Q I R I L K E L Y Y I K G V R S
 
AT2G17950.1     P T A D Q I Q K I T A R L R Q F G K I E G K N V F Y W F Q N H K A R E R Q K K R F N G T N M T T P S S S P N S V M M A A
pt002935_POPTR_    P N G A E I Q Q I S A R L R K Y G K I E G K N V F Y W F Q N H K A R E R Q K K R F - - - - - - - - - - - - - - - - - - T
 
AT2G17950.1     N D H Y H P L L H H H H G V P M Q - - - - - R P A N S V N V K L N Q D H H L Y H H N K P Y P S F N N G N L N H A S S G T
pt002935_POPTR_    N D - - - - - - - - - - - V P T Q Q R T T L K P - - - - - - - - - E D Y Y S Y K Y S G - - - S N N N P G F S S A S S S S
 
AT2G17950.1     E C G V V N A S N G Y M S S H V Y G S - - M E Q - - - - D C S - - - - - - - - - - M N Y N N V G G G W A N M D H H Y S S
pt002935_POPTR_    N T G A V T V - - G Q A D N Y G Y G S V T M Q E K K N W D C S V P A G G E S M N N I N Y G S R G G I Y P - - - - - Y S S
 
AT2G17950.1     A P Y N F F D R A K P L F G L E G H Q E E E E C G G D A Y L E H R R T L P L F P M H G E D - - - - - H I N G - - - - - -
pt002935_POPTR_    S - Y T V F D - - - - - - - - - - - Q D Q E A A - - - - - - E K I E T L P L F P M H G E D I S T S F N I N N V N P D F Y
 
AT2G17950.1     - - - - - G S G A I W K Y G Q S E V R P C A S L E L R L N - - - - - - - - -
pt002935_POPTR_    Y S S W Y G S D - - - D Y G N A T T S R - T S L E L S L Y S Y N G Q Q Q D Y
 
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