fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G18160.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm032682 not found in 160aa AT4G34590.1 1st_not 0.428571428 II
Gm030618 not found in 166aa AT4G34590.1 not_not 0.425170068 III

Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G18160.1     MASSSSTYRSSSS-SDGGNNNPSDSVVTV--DERKRKRMLSNRESARRSRMRKQKHVDDL
gm032682_Glyma1 MASSSGT--SSGS-SLLQNSGSEEDLQAVM-DQRKRKRMISNRESARRSRMRKQKHLDDL
gm030618_Glyma1 MACSSGT--SSGSLSLLQNSGSEEDLQAMMEDQRKRKRMISNRESARRSRMRKQKHLDDL
                **.**.*  **.* *   *....:.: ::  *:******:****************:***

AT2G18160.1     TAQINQLSNDNRQILNSLTVTSQLYMKIQAENSVLTAQMEELSTRLQSLNEIVDLVQ--S
gm032682_Glyma1 VSQVAQLRKENQQILTSVNITTQQYLSVEAENSVLRAQVGELSHRLESLNEIVDVLNA-T
gm030618_Glyma1 VSQVAQLRKENQQILTSVNITTQQYLSVEAENSVLRAQVGELSHRLESLNEIVDVLNATT
                .:*: ** ::*:***.*:.:*:* *:.::****** **: *** **:*******:::  :

AT2G18160.1     NGAGFGVDQIDGCGFDDRTVGIDGY--YDDMNMMSNVNHWGGSVYTNQPIMAN-DINMY
gm032682_Glyma1 TVAGFGAAATSSTFVEPI--NNNSF--FNPLNMG----------YLNHPIMASADILQY
gm030618_Glyma1 TVAGFGAAA-SSTFVEPMNNNNNSFFNFNPLNMG----------YLNQPIMASADILQY
                . ****.   ..  .:    . :.:  :: :**           * *:****. **  *


BoxShade v3.31 C (beta, 970507) Output
AT2G18160.1     M A S S S S T Y R S S S S - S D G G N N N P S D S V V T V - - D E R K R K R M L S N R E S A R R S R M R K Q K H V D D L
gm032682_Glyma1    M A S S S G T - - S S G S - S L L Q N S G S E E D L Q A V M - D Q R K R K R M I S N R E S A R R S R M R K Q K H L D D L
gm030618_Glyma1    M A C S S G T - - S S G S L S L L Q N S G S E E D L Q A M M E D Q R K R K R M I S N R E S A R R S R M R K Q K H L D D L
 
AT2G18160.1     T A Q I N Q L S N D N R Q I L N S L T V T S Q L Y M K I Q A E N S V L T A Q M E E L S T R L Q S L N E I V D L V Q - - S
gm032682_Glyma1    V S Q V A Q L R K E N Q Q I L T S V N I T T Q Q Y L S V E A E N S V L R A Q V G E L S H R L E S L N E I V D V L N A - T
gm030618_Glyma1    V S Q V A Q L R K E N Q Q I L T S V N I T T Q Q Y L S V E A E N S V L R A Q V G E L S H R L E S L N E I V D V L N A T T
 
AT2G18160.1     N G A G F G V D Q I D G C G F D D R T V G I D G Y - - Y D D M N M M S N V N H W G G S V Y T N Q P I M A N - D I N M Y
gm032682_Glyma1    T V A G F G A A A T S S T F V E P I - - N N N S F - - F N P L N M G - - - - - - - - - - Y L N H P I M A S A D I L Q Y
gm030618_Glyma1    T V A G F G A A A - S S T F V E P M N N N N N S F F N F N P L N M G - - - - - - - - - - Y L N Q P I M A S A D I L Q Y
 
0