fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G18328.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt000491 not found in 85aa AT4G39250.1 not_not 0.688888888 III
Pt018851 not found in 99aa AT4G39250.1 not_not 0.681481481 III
Pt022324 not found in 113aa AT4G39250.1 not_not 0.674074074 III
Pt021017 not found in 87aa AT2G21650.1 not_not 0.674074074 III
Pt019385 not found in 100aa AT1G19510.1 not_not 0.674074074 III
Pt038744 not found in 99aa AT1G75250.2 not_not 0.629629629 III
Pt000040 not found in 84aa AT1G75250.1 not_not 0.622222222 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G18328.1     MASSSM-----STSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGG-KSTEEVKRHYE
pt038744_POPTR_ --MSYFTSSNGSGSSWTAKQNKLFEKALAVYDKDTPDRWQNVAKAVGG-KSPEEVKRHYD
pt021017_POPTR_ MASSSM-SSRG-SGSWTVQQNKAFERALAVYDRDTPDRWYNVARAVGG-KTAEEVKRHYE
pt000040_POPTR_ --MAYFTSSHGSSSSWTPKQNKLFEKALAVYDKDTPDRWQNVAKAVGG-KSAEEVKMHYD
pt018851_POPTR_ MASSSV-SSRG-SGSWTAQQNKAFERALAVYDRDTPDRWHNVARAVGG-KTAEEVKRHYE
pt022324_POPTR_ MSSSYQ-ASRNSRSAWTPRENKLFEKALALFDKDTPDRWQNIAKAVGGVKSAEEVKKHYE
pt019385_POPTR_ MSSSHQ-TPRNSSSSWTPRENKLFEKALALFDKDTPDRWQNIAKAVGGVKSAEEMKRHYE
pt000491_POPTR_ MASNSLNSSRNCSSSWTPKQNKLFEKALALYDKDTPDRWHNVAKAVGG-KSAEEVERHYE
                             .:** :::* ** *** :*:****** ::*:**** *:.**:: **:

AT2G18328.1     LLLRDVNDIESGRYPQPRYRNTN-------------------------------
pt038744_POPTR_ RLVEDLVYIESGQAPLPNYKPSGSNGRGLVEE------QRLTRNLKLQ------
pt021017_POPTR_ LLVEDVKHIESGHVPFPNYRTTGANGHARG------------------------
pt000040_POPTR_ RLVEDLTYIESGQAPLPNYKPSGSNST---------------------------
pt018851_POPTR_ ILVEDVKHIESGRVPFPNYRTTGANGHSKTGE------EKMMKNMKLQ------
pt022324_POPTR_ ILIEDLQHIESGRIPIPKYKSSGSCNNTNEEESEVQDSDRLPIYVCGKWMLLSS
pt019385_POPTR_ ILIEDLKHIESGRVPIPNYKSSRSYSNTNEEE-------RLLKYVKLQ------
pt000491_POPTR_ ILIKDVREIESGRVPFPNYRSSGNSN----------------------------
                 *:.*:  ****: * *.*: :
BoxShade v3.31 C (beta, 970507) Output
AT2G18328.1     M A S S S M - - - - - S T S S W T A R E D K Q F E M A L A K F D K D T P D R W Q K I A R A V G G - K S T E E V K R H Y E
pt038744_POPTR_    - - M S Y F T S S N G S G S S W T A K Q N K L F E K A L A V Y D K D T P D R W Q N V A K A V G G - K S P E E V K R H Y D
pt021017_POPTR_    M A S S S M - S S R G - S G S W T V Q Q N K A F E R A L A V Y D R D T P D R W Y N V A R A V G G - K T A E E V K R H Y E
pt000040_POPTR_    - - M A Y F T S S H G S S S S W T P K Q N K L F E K A L A V Y D K D T P D R W Q N V A K A V G G - K S A E E V K M H Y D
pt018851_POPTR_    M A S S S V - S S R G - S G S W T A Q Q N K A F E R A L A V Y D R D T P D R W H N V A R A V G G - K T A E E V K R H Y E
pt022324_POPTR_    M S S S Y Q - A S R N S R S A W T P R E N K L F E K A L A L F D K D T P D R W Q N I A K A V G G V K S A E E V K K H Y E
pt019385_POPTR_    M S S S H Q - T P R N S S S S W T P R E N K L F E K A L A L F D K D T P D R W Q N I A K A V G G V K S A E E M K R H Y E
pt000491_POPTR_    M A S N S L N S S R N C S S S W T P K Q N K L F E K A L A L Y D K D T P D R W H N V A K A V G G - K S A E E V E R H Y E
 
AT2G18328.1     L L L R D V N D I E S G R Y P Q P R Y R N T N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt038744_POPTR_    R L V E D L V Y I E S G Q A P L P N Y K P S G S N G R G L V E E - - - - - - Q R L T R N L K L Q - - - - - -
pt021017_POPTR_    L L V E D V K H I E S G H V P F P N Y R T T G A N G H A R G - - - - - - - - - - - - - - - - - - - - - - - -
pt000040_POPTR_    R L V E D L T Y I E S G Q A P L P N Y K P S G S N S T - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt018851_POPTR_    I L V E D V K H I E S G R V P F P N Y R T T G A N G H S K T G E - - - - - - E K M M K N M K L Q - - - - - -
pt022324_POPTR_    I L I E D L Q H I E S G R I P I P K Y K S S G S C N N T N E E E S E V Q D S D R L P I Y V C G K W M L L S S
pt019385_POPTR_    I L I E D L K H I E S G R V P I P N Y K S S R S Y S N T N E E E - - - - - - - R L L K Y V K L Q - - - - - -
pt000491_POPTR_    I L I K D V R E I E S G R V P F P N Y R S S G N S N - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
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