fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G18328.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb008392 not found in 98aa AT2G21650.1 1st_not 0.607407407 II
Sb033118 not found in 238aa AT1G75250.1 not_not 0.6 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G18328.1     --MASSSMSTS-------------------SWTAREDKQF--------------------
Sb033118_Sorbi1 FLLSHHYLQLQLGPLHACCPINPIYTHVCIFWIIDRSSYYVHHLRRSSDVSACMSGGPVA
Sb008392_Sorbi1 --MATMSLSSTR-----------------AQWTAKQNKLF--------------------
                  ::   :.                      *   ... :                    

AT2G18328.1     -------EMALAKFDKD---------TPDRWQKIARAV-GGKSTEEVKRHYELLL----R
Sb033118_Sorbi1 GGAAVGREGHLAGLDVADVLLQQVVVAPDVLGGLAAADGAGDVVPPVRR---VLVVNGQR
Sb008392_Sorbi1 -------EQALAVYDRD---------TPDRWHNIARAVGGGKSADEVRRYYELLV----K
                       *  **  *           :**    :* *  .*. .  *:*   :*:    :

AT2G18328.1     DVNDIESGRYPQPRYRNTN------------------------
Sb033118_Sorbi1 LLEQLVLLRRPLRARRCAR----HRLHRRHSVAFLELAREEGS
Sb008392_Sorbi1 DVEHIEAGKVPFPAYRCPAGYDADRIDRSPALKHLKI------
                 ::.:   : *    * .
BoxShade v3.31 C (beta, 970507) Output
AT2G18328.1     - - M A S S S M S T S - - - - - - - - - - - - - - - - - - - S W T A R E D K Q F - - - - - - - - - - - - - - - - - - - -
Sb033118_Sorbi1    F L L S H H Y L Q L Q L G P L H A C C P I N P I Y T H V C I F W I I D R S S Y Y V H H L R R S S D V S A C M S G G P V A
Sb008392_Sorbi1    - - M A T M S L S S T R - - - - - - - - - - - - - - - - - A Q W T A K Q N K L F - - - - - - - - - - - - - - - - - - - -
 
AT2G18328.1     - - - - - - - E M A L A K F D K D - - - - - - - - - T P D R W Q K I A R A V - G G K S T E E V K R H Y E L L L - - - - R
Sb033118_Sorbi1    G G A A V G R E G H L A G L D V A D V L L Q Q V V V A P D V L G G L A A A D G A G D V V P P V R R - - - V L V V N G Q R
Sb008392_Sorbi1    - - - - - - - E Q A L A V Y D R D - - - - - - - - - T P D R W H N I A R A V G G G K S A D E V R R Y Y E L L V - - - - K
 
AT2G18328.1     D V N D I E S G R Y P Q P R Y R N T N - - - - - - - - - - - - - - - - - - - - - - - -
Sb033118_Sorbi1    L L E Q L V L L R R P L R A R R C A R - - - - H R L H R R H S V A F L E L A R E E G S
Sb008392_Sorbi1    D V E H I E A G K V P F P A Y R C P A G Y D A D R I D R S P A L K H L K I - - - - - -
 
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