fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G18328.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm030637 not found in 91aa AT1G19510.1 1st_not 0.711111111 II

Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G18328.1     MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYEL
gm030637_Glyma1 MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEI
                *****:*.     ****.:::* ** ****:*****:***::*:******::*******:

AT2G18328.1     LLRDVNDIESGRYPQPRYRNTN---------
gm030637_Glyma1 LLEDLRHIESGRVPLPKYKSTGSSTNVDEEE
                **.*:..***** * *:*:.*.         


BoxShade v3.31 C (beta, 970507) Output
AT2G18328.1     M A S S S M S T - - - - - S S W T A R E D K Q F E M A L A K F D K D T P D R W Q K I A R A V G G K S T E E V K R H Y E L
gm030637_Glyma1    M A S S S L S K Q K A S D S S W T P K Q N K L F E K A L A K Y D K D T P E R W Q N V A K A V G G K S A D E V K R H Y E I
 
AT2G18328.1     L L R D V N D I E S G R Y P Q P R Y R N T N - - - - - - - - -
gm030637_Glyma1    L L E D L R H I E S G R V P L P K Y K S T G S S T N V D E E E
 
0