fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G21320.1 HDHNMIDLNSNPQRVHE at 139/172 in AT2G21320.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pp004666 NQPRMIDLNSRPKRLQS in 201/220 AT4G38960.1 1st_not 0.451351351 II
Pp035016 NQSRMIDLNSRPKRLQN in 202/221 AT4G38960.1 not_not 0.451351351 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G21320.1     MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICE
pp035016_Pp1s31 MRTLCDVCEAAPARLFCAADEAALCLKCDEKVHSCNKLAYRHVRLELAESRPVPRCDICE
pp004666_Pp1s20 MRTLCDVCEAAPARLFCAADEAALCLKCDEKVHSCNKLANRHVRLELAESRAVPRCDICE
                ** ***.**:*.* :********** .******.***** **:*: **:.  .* *****

AT2G21320.1     NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQRIEFPGDK-------------
pp035016_Pp1s31 NAPAFFFCGVDGTSLCLQCDMDVHVGGKKAHERYLMMRQRVELPSRKLRFEDTVDTEKPT
pp004666_Pp1s20 NAPAFFFCGVDGTSLCLQCDMDVHVGGKKAHERYLMMGQRVELPSRKLRFEDNVDTEKLP
                ******:* :**:******** ******::*.*:*:: **:*:*. *             

AT2G21320.1     --PN----------------------------HADQL--GLRCQKASSGRGQESNG----
pp035016_Pp1s31 AEPNSVPADKNGTLLPDQHHHHHYHHHHHHHHHEDELRAGLPASKPSCDR-DNSNAPAIA
pp004666_Pp1s20 AEPSNAPTDKNG-VLPDHHHHHHYHHHHHHHHHEDEVRAGLPAPKQSCDR-DASNAPAIA
                  *.                            * *::  ** . * *..* : **.    

AT2G21320.1     --NGDHDH------------NMIDLNSNPQRVHEPGSHNQEEGIDVNNANNHEHE
pp035016_Pp1s31 IAAGDEESLLLDDCLVQNQSRMIDLNSRPKRLQNQAS-VPDKG------------
pp004666_Pp1s20 ITAGDEESLLIDGCIHQNQPRMIDLNSRPKRLQSQAS-VPDKG------------
                   **.:             .******.*:*::. .*   ::*
BoxShade v3.31 C (beta, 970507) Output
AT2G21320.1     M R I L C D A C E S A A A I V F C A A D E A A L C C S C D E K V H K C N K L A S R H L R V G L A D P S N A P S C D I C E
pp035016_Pp1s31    M R T L C D V C E A A P A R L F C A A D E A A L C L K C D E K V H S C N K L A Y R H V R L E L A E S R P V P R C D I C E
pp004666_Pp1s20    M R T L C D V C E A A P A R L F C A A D E A A L C L K C D E K V H S C N K L A N R H V R L E L A E S R A V P R C D I C E
 
AT2G21320.1     N A P A F F Y C E I D G S S L C L Q C D M V V H V G G K R T H R R F L L L R Q R I E F P G D K - - - - - - - - - - - - -
pp035016_Pp1s31    N A P A F F F C G V D G T S L C L Q C D M D V H V G G K K A H E R Y L M M R Q R V E L P S R K L R F E D T V D T E K P T
pp004666_Pp1s20    N A P A F F F C G V D G T S L C L Q C D M D V H V G G K K A H E R Y L M M G Q R V E L P S R K L R F E D N V D T E K L P
 
AT2G21320.1     - - P N - - - - - - - - - - - - - - - - - - - - - - - - - - - - H A D Q L - - G L R C Q K A S S G R G Q E S N G - - - -
pp035016_Pp1s31    A E P N S V P A D K N G T L L P D Q H H H H H Y H H H H H H H H H E D E L R A G L P A S K P S C D R - D N S N A P A I A
pp004666_Pp1s20    A E P S N A P T D K N G - V L P D H H H H H H Y H H H H H H H H H E D E V R A G L P A P K Q S C D R - D A S N A P A I A
 
AT2G21320.1     - - N G D H D H - - - - - - - - - - - - N M I D L N S N P Q R V H E P G S H N Q E E G I D V N N A N N H E H E
pp035016_Pp1s31    I A A G D E E S L L L D D C L V Q N Q S R M I D L N S R P K R L Q N Q A S - V P D K G - - - - - - - - - - - -
pp004666_Pp1s20    I T A G D E E S L L I D G C I H Q N Q P R M I D L N S R P K R L Q S Q A S - V P D K G - - - - - - - - - - - -
 
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