fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G21320.1 HDHNMIDLNSNPQRVHE at 139/172 in AT2G21320.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt022229 MDNNLIDLNARPQRIHG in 166/203 AT4G38960.1 1st_not 0.613513513 II
Pt000227 VDKNMIDLNMKPHRIHE in 165/184 AT2G21320.1 not_1st 0.610810810 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G21320.1     MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICE
pt000227_POPTR_ MRTLCDACESAFAIVFCAADEAALCLACDKKVHMCNKLASRHVRVGLANPSEVPRCDICE
pt022229_POPTR_ MRTICDVCESAAAILFCAADEAALCRSCDEKVHLCNKLASRHVRVGLADPSAVPQCDICE
                ** :**.**** **:********** :**:*** ********:*****:** .* *****

AT2G21320.1     NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQRIEFPGDKPNHADQLGL----
pt000227_POPTR_ NAPAFFYCETDGSSLCLQCDMTVHVGGKRTHGRYLLLRQKIEFPGNQP-QPEDPAPQPMY
pt022229_POPTR_ NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKPGRMEEQGQQPLD
                ********* *********** ********* *:*****::****::* : :: .     

AT2G21320.1     ---------RCQKASSGRGQE-------------SNGNGDHDHNMIDLNSNPQRVHEPGS
pt000227_POPTR_ PGETRRGQNRPQKATSGENRQNRQASPVLMSVTNSDGHDKVDKNMIDLNMKPHRIHEHAS
pt022229_POPTR_ HNETRRDQNQPLKLTARENKQNHRASPVPMVENNTDSDGKMDNNLIDLNARPQRIHGQNS
                         :  * :: ..::             ::.... *:*:**** .*:*:*   *

AT2G21320.1     HNQEE-----GIDVNNANNHEHE
pt000227_POPTR_ NNQEQ------------------
pt022229_POPTR_ TNQENHESSSAVPVGSFKREPQK
                 ***:
BoxShade v3.31 C (beta, 970507) Output
AT2G21320.1     M R I L C D A C E S A A A I V F C A A D E A A L C C S C D E K V H K C N K L A S R H L R V G L A D P S N A P S C D I C E
pt000227_POPTR_    M R T L C D A C E S A F A I V F C A A D E A A L C L A C D K K V H M C N K L A S R H V R V G L A N P S E V P R C D I C E
pt022229_POPTR_    M R T I C D V C E S A A A I L F C A A D E A A L C R S C D E K V H L C N K L A S R H V R V G L A D P S A V P Q C D I C E
 
AT2G21320.1     N A P A F F Y C E I D G S S L C L Q C D M V V H V G G K R T H R R F L L L R Q R I E F P G D K P N H A D Q L G L - - - -
pt000227_POPTR_    N A P A F F Y C E T D G S S L C L Q C D M T V H V G G K R T H G R Y L L L R Q K I E F P G N Q P - Q P E D P A P Q P M Y
pt022229_POPTR_    N A P A F F Y C E I D G S S L C L Q C D M I V H V G G K R T H G R Y L L L R Q R V E F P G D K P G R M E E Q G Q Q P L D
 
AT2G21320.1     - - - - - - - - - R C Q K A S S G R G Q E - - - - - - - - - - - - - S N G N G D H D H N M I D L N S N P Q R V H E P G S
pt000227_POPTR_    P G E T R R G Q N R P Q K A T S G E N R Q N R Q A S P V L M S V T N S D G H D K V D K N M I D L N M K P H R I H E H A S
pt022229_POPTR_    H N E T R R D Q N Q P L K L T A R E N K Q N H R A S P V P M V E N N T D S D G K M D N N L I D L N A R P Q R I H G Q N S
 
AT2G21320.1     H N Q E E - - - - - G I D V N N A N N H E H E
pt000227_POPTR_    N N Q E Q - - - - - - - - - - - - - - - - - -
pt022229_POPTR_    T N Q E N H E S S S A V P V G S F K R E P Q K
 
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