fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G23340.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029915 not found in 153aa AT2G23340.1 not_1st 0.456193353 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G23340.1     ME-----TEAAVTATVTAATMGIGTRK----RDLKPYKGIRMRKWGKWVAEIREPNKRSR
gm029915_Glyma1 MEGEGRRREGGERETATAA----ATRKVVEGADQRRYKGIRMRKWGKWVAEIREPNKRSR
                **      *..   *.***    .***     * : ************************

AT2G23340.1     IWLGSYATPEAAARAYDTAVFYLRGPSARLNFPELLAGLTVSNGGGRGGDLSAAYIRRKA
gm029915_Glyma1 IWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLIGEGAAALTG-GCDMSAASIRKKA
                ******:** ************************** *  .:   * * *:*** **:**

AT2G23340.1     AEVGAQVDALGATVVVNTGGENRGDYEKIENCRKSGNGSLERVDLNKLPDPENSDGDDDE
gm029915_Glyma1 SEL------LSASC----GG-------------GSGDFAVRVVDLNKMPEPESSDCEWNV
                :*:      *.*:     **              **: ::. *****:*:**.** : : 

AT2G23340.1     CVKRR
gm029915_Glyma1 N----
BoxShade v3.31 C (beta, 970507) Output
AT2G23340.1     M E - - - - - T E A A V T A T V T A A T M G I G T R K - - - - R D L K P Y K G I R M R K W G K W V A E I R E P N K R S R
gm029915_Glyma1    M E G E G R R R E G G E R E T A T A A - - - - A T R K V V E G A D Q R R Y K G I R M R K W G K W V A E I R E P N K R S R
 
AT2G23340.1     I W L G S Y A T P E A A A R A Y D T A V F Y L R G P S A R L N F P E L L A G L T V S N G G G R G G D L S A A Y I R R K A
gm029915_Glyma1    I W L G S Y S T P V A A A R A Y D T A V F Y L R G P S A R L N F P E L L I G E G A A A L T G - G C D M S A A S I R K K A
 
AT2G23340.1     A E V G A Q V D A L G A T V V V N T G G E N R G D Y E K I E N C R K S G N G S L E R V D L N K L P D P E N S D G D D D E
gm029915_Glyma1    S E L - - - - - - L S A S C - - - - G G - - - - - - - - - - - - - G S G D F A V R V V D L N K M P E P E S S D C E W N V
 
AT2G23340.1     C V K R R
gm029915_Glyma1    N - - - -
 
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