fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G23340.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm047356 not found in 147aa AT2G23340.1 1st_1st 0.495468277 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G23340.1     METEAAVTATVTAATMGIGTRKR------DLKPYKGIRMRKWGKWVAEIREPNKRSRIWL
gm047356_Glyma1 MEGEEG----------GIATKKRGKEGETETTRYKGIRMRKWGKWVAEIREPNKRSRIWL
                ** * .          **.*:**      : . ***************************

AT2G23340.1     GSYATPEAAARAYDTAVFYLRGPSARLNFPELLAGLTVSNGGGRGGDLSAAYIRRKAAEV
gm047356_Glyma1 GSYSTPVAAARAYDTAVFHLRGPSARLNFPELVA------AEGPAADMSAASIRKKATEV
                ***:** ***********:*************:*      . * ..*:*** **:**:**

AT2G23340.1     GAQVDALGATVVVNTGGENRGDYEKIENCRKSGNGSLERVDLNKLPDPENSDGD--DDEC
gm047356_Glyma1 GARVDAL---------------HRQHPHALPAGEFA-DRVDLNKMPEPENSDCDYWDRD-
                **:****               :.:  :.  :*: : :******:*:***** *  * : 

AT2G23340.1     VKRR
gm047356_Glyma1 ----
BoxShade v3.31 C (beta, 970507) Output
AT2G23340.1     M E T E A A V T A T V T A A T M G I G T R K R - - - - - - D L K P Y K G I R M R K W G K W V A E I R E P N K R S R I W L
gm047356_Glyma1    M E G E E G - - - - - - - - - - G I A T K K R G K E G E T E T T R Y K G I R M R K W G K W V A E I R E P N K R S R I W L
 
AT2G23340.1     G S Y A T P E A A A R A Y D T A V F Y L R G P S A R L N F P E L L A G L T V S N G G G R G G D L S A A Y I R R K A A E V
gm047356_Glyma1    G S Y S T P V A A A R A Y D T A V F H L R G P S A R L N F P E L V A - - - - - - A E G P A A D M S A A S I R K K A T E V
 
AT2G23340.1     G A Q V D A L G A T V V V N T G G E N R G D Y E K I E N C R K S G N G S L E R V D L N K L P D P E N S D G D - - D D E C
gm047356_Glyma1    G A R V D A L - - - - - - - - - - - - - - - H R Q H P H A L P A G E F A - D R V D L N K M P E P E N S D C D Y W D R D -
 
AT2G23340.1     V K R R
gm047356_Glyma1    - - - -
 
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