fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G24430.1 HMPVSGLNLNLGGALV at 263/316 in AT2G24430.1
EMSQCMDLDGYWPSY at 306/316 in AT2G24430.1
HMPVSGLNLNLGGALV at 263/316 in AT2G24430.2
EMSQCMDLDGYWPSY at 306/316 in AT2G24430.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt009519 CFTVSGLNLNLGGATS in 259/334 AT2G24430.2 1st_not 0.571186440 II
GMQQCMDLENYWPAY in 325/334
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G24430.1     ME---QGDHQQHKKEEEALPPGFRFHPTDEELISYYLVNKIADQNFTGKAIADVDLNKSE
pt009519_POPTR_ MEKDMEGD-----AKEETLPPGFRFHPTDEELITYYLQNKISDADFSCRAIGDVDLNKCE
                **   :**      :**:***************:*** ***:* :*: :**.******.*

AT2G24430.1     PWELPEKAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSTTSELVGM
pt009519_POPTR_ PWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSQLVGM
                **:** ***** ****************************************.**:****

AT2G24430.1     KKTLVFYRGRAPRGEKTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEATKKYISTSS
pt009519_POPTR_ KKTLVFYRGRAPRGEKTNWVMHEYRVHAKAGFRASKQDEWVVCRIFQKSAGAKKYPS---
                ***************** *******:*:*:.:*:**********:*:*: .:*** *   

AT2G24430.1     SSTSHHHNNHTRASILSTNNNNPNYSSDLLQLPPHLQPHPSLNINQS---------LMAN
pt009519_POPTR_ --------NQSRAG-------NPLYN---LEIGPSVMPSQMMQAADNFQLPIGRNYMMSN
                        *::**.       ** *.   *:: * : *   ::  :.         :*:*

AT2G24430.1     AVHLAELSRVFRASTSTTMDSSHQQLMNYTH---------MPVSGLNLNLGGALVQ----
pt009519_POPTR_ AELQAELARVFRAGGSTGINLPMQSPLNNSYSVGGGAGGCFTVSGLNLNLGGATSQPVLR
                *   ***:*****. ** :: . *. :* ::         :.***********  *    

AT2G24430.1     --PPPVVSLEDV---------------AAVSASYNGENGFGN--VEMSQCMDLDGYWPSY
pt009519_POPTR_ PMPPPVMNQHDVTPSMMTSTSSYAVEQAAYGAEMNNANGPSNRFMGMQQCMDLENYWPAY
                  ****:. .**               ** .*. *. ** .*  : *.*****:.***:*
BoxShade v3.31 C (beta, 970507) Output
AT2G24430.1     M E - - - Q G D H Q Q H K K E E E A L P P G F R F H P T D E E L I S Y Y L V N K I A D Q N F T G K A I A D V D L N K S E
pt009519_POPTR_    M E K D M E G D - - - - - A K E E T L P P G F R F H P T D E E L I T Y Y L Q N K I S D A D F S C R A I G D V D L N K C E
 
AT2G24430.1     P W E L P E K A K M G G K E W Y F F S L R D R K Y P T G V R T N R A T N T G Y W K T T G K D K E I F N S T T S E L V G M
pt009519_POPTR_    P W D L P G K A K M G E K E W Y F F S L R D R K Y P T G V R T N R A T N T G Y W K T T G K D K E I F N S V T S Q L V G M
 
AT2G24430.1     K K T L V F Y R G R A P R G E K T C W V M H E Y R L H S K S S Y R T S K Q D E W V V C R V F K K T E A T K K Y I S T S S
pt009519_POPTR_    K K T L V F Y R G R A P R G E K T N W V M H E Y R V H A K A G F R A S K Q D E W V V C R I F Q K S A G A K K Y P S - - -
 
AT2G24430.1     S S T S H H H N N H T R A S I L S T N N N N P N Y S S D L L Q L P P H L Q P H P S L N I N Q S - - - - - - - - - L M A N
pt009519_POPTR_    - - - - - - - - N Q S R A G - - - - - - - N P L Y N - - - L E I G P S V M P S Q M M Q A A D N F Q L P I G R N Y M M S N
 
AT2G24430.1     A V H L A E L S R V F R A S T S T T M D S S H Q Q L M N Y T H - - - - - - - - - M P V S G L N L N L G G A L V Q - - - -
pt009519_POPTR_    A E L Q A E L A R V F R A G G S T G I N L P M Q S P L N N S Y S V G G G A G G C F T V S G L N L N L G G A T S Q P V L R
 
AT2G24430.1     - - P P P V V S L E D V - - - - - - - - - - - - - - - A A V S A S Y N G E N G F G N - - V E M S Q C M D L D G Y W P S Y
pt009519_POPTR_    P M P P P V M N Q H D V T P S M M T S T S S Y A V E Q A A Y G A E M N N A N G P S N R F M G M Q Q C M D L E N Y W P A Y
 
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