fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G24430.1 HMPVSGLNLNLGGALV at 263/316 in AT2G24430.1
EMSQCMDLDGYWPSY at 306/316 in AT2G24430.1
HMPVSGLNLNLGGALV at 263/316 in AT2G24430.2
EMSQCMDLDGYWPSY at 306/316 in AT2G24430.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb006176 TLSGSGLNLNLGASPA in 280/376 AT2G24430.2 1st_not 0.461016949 II
Sb000733 not found in 341aa AT3G18400.1 not_not 0.420338983 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G24430.1     MEQ-----GDHQQHKKEEEALPPGFRFHPTDEELISYYLVNKIADQNFTGKAIADVDLNK
Sb000733_Sorbi1 ----------------MEEGLPPGFRFHPTDEELVTYYLTRKVSDFAFATRAIADVDLNK
Sb006176_Sorbi1 MEAGGGGGGGGGESKKKEESLPPGFRFHPTDEELITYYLRQKIADGSFTARAIAEVDLNK
                                 **.**************::*** .*::*  *: :***:*****

AT2G24430.1     SEPWELPEKAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS---TTS
Sb000733_Sorbi1 CEPWDLPSKASMGEKEWYFFSMRDRKYPTGIRTNRATDSGYWKTTGKDKEIFHCGM----
Sb006176_Sorbi1 CEPWDLPEKAKLGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIYTGQLPATP
                .***:**.**.:* *******:********:******::************:        

AT2G24430.1     ELVGMKKTLVFYRGRAPRGEKTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEATKKY
Sb000733_Sorbi1 -LVGMKKTLVFYRGRAPKGQKTSWVMHEYRLQNKFPYKPNK-EEWVVCRVFKKCQVIKMR
Sb006176_Sorbi1 ELVGMKKTLVFYKGRAPRGEKTNWVMHEYRLHSKSVPKSNK-DEWVVCRVFAKSAGAKKY
                 ***********:****:*:** ********:.*   :..* :******** *    *  

AT2G24430.1     ISTSS-SSTSHHHNNHTRA----------SILST-------------NNNNPNYS-SDLL
Sb000733_Sorbi1 PPQDSPTMGSPCHDAGNASLGELGELDVSSIL------------------------GGLA
Sb006176_Sorbi1 PSNNAHSRSSHHH--HPYALDM-----VPPLLPTLLQHDPFARHHGHHHHHPYMTPADLA
                 . .: :  *  *     :          .:*                        ..* 

AT2G24430.1     QLP----------PHLQPHPSLNINQ-------------SLMAN-AVHLAELSRVFRAST
Sb000733_Sorbi1 AAA--AHTSSGSPPGVLHHQGSAAAAESFVGAHNRPVDMSAYMS-WMAAANQGA---AAA
Sb006176_Sorbi1 ELARFARGTPGLHPHIQPHPGTSAAA-------------AAYMNPAVAAA-------APP
                  .          * :  * .                  :   .  :  *       *..

AT2G24430.1     STTMDSSHQQLMNYTHMPVSGLNLNL----------------GGALVQPPPVVSLEDVA-
Sb000733_Sorbi1 AAMLPWA-------TTTP-PGLFGNVFAPNNHQLLQKPLPFAGGCSGQPR----------
Sb006176_Sorbi1 SFTLSG-------------SGLNLNL----------------GASPAMPSPPQALHAMSM
                :  :               .**  *:                *..   *           

AT2G24430.1     --------------------------AVSASYNG-------ENGFGNVEMS---QCMDLD
Sb000733_Sorbi1 GLGGVVANNVVVGSGEH------------AMFGSSVV----KVGMECDQQQQPEQQLGMD
Sb006176_Sorbi1 AMGGQTGNHHQVMAGEHQHQHHQQQMATAAGLGGCVIVPGADGGFGADAAGGRYQSLDVE
                                             *  ..       . *:         * :.::

AT2G24430.1     G----YWPS-Y--
Sb000733_Sorbi1 E---STWRT-F--
Sb006176_Sorbi1 QLVERYWPAGYQV
                      * : :
BoxShade v3.31 C (beta, 970507) Output
AT2G24430.1     M E Q - - - - - G D H Q Q H K K E E E A L P P G F R F H P T D E E L I S Y Y L V N K I A D Q N F T G K A I A D V D L N K
Sb000733_Sorbi1    - - - - - - - - - - - - - - - - M E E G L P P G F R F H P T D E E L V T Y Y L T R K V S D F A F A T R A I A D V D L N K
Sb006176_Sorbi1    M E A G G G G G G G G G E S K K K E E S L P P G F R F H P T D E E L I T Y Y L R Q K I A D G S F T A R A I A E V D L N K
 
AT2G24430.1     S E P W E L P E K A K M G G K E W Y F F S L R D R K Y P T G V R T N R A T N T G Y W K T T G K D K E I F N S - - - T T S
Sb000733_Sorbi1    C E P W D L P S K A S M G E K E W Y F F S M R D R K Y P T G I R T N R A T D S G Y W K T T G K D K E I F H C G M - - - -
Sb006176_Sorbi1    C E P W D L P E K A K L G E K E W Y F F S L R D R K Y P T G V R T N R A T N A G Y W K T T G K D K E I Y T G Q L P A T P
 
AT2G24430.1     E L V G M K K T L V F Y R G R A P R G E K T C W V M H E Y R L H S K S S Y R T S K Q D E W V V C R V F K K T E A T K K Y
Sb000733_Sorbi1    - L V G M K K T L V F Y R G R A P K G Q K T S W V M H E Y R L Q N K F P Y K P N K - E E W V V C R V F K K C Q V I K M R
Sb006176_Sorbi1    E L V G M K K T L V F Y K G R A P R G E K T N W V M H E Y R L H S K S V P K S N K - D E W V V C R V F A K S A G A K K Y
 
AT2G24430.1     I S T S S - S S T S H H H N N H T R A - - - - - - - - - - S I L S T - - - - - - - - - - - - - N N N N P N Y S - S D L L
Sb000733_Sorbi1    P P Q D S P T M G S P C H D A G N A S L G E L G E L D V S S I L - - - - - - - - - - - - - - - - - - - - - - - - G G L A
Sb006176_Sorbi1    P S N N A H S R S S H H H - - H P Y A L D M - - - - - V P P L L P T L L Q H D P F A R H H G H H H H H P Y M T P A D L A
 
AT2G24430.1     Q L P - - - - - - - - - - P H L Q P H P S L N I N Q - - - - - - - - - - - - - S L M A N - A V H L A E L S R V F R A S T
Sb000733_Sorbi1    A A A - - A H T S S G S P P G V L H H Q G S A A A A E S F V G A H N R P V D M S A Y M S - W M A A A N Q G A - - - A A A
Sb006176_Sorbi1    E L A R F A R G T P G L H P H I Q P H P G T S A A A - - - - - - - - - - - - - A A Y M N P A V A A A - - - - - - - A P P
 
AT2G24430.1     S T T M D S S H Q Q L M N Y T H M P V S G L N L N L - - - - - - - - - - - - - - - - G G A L V Q P P P V V S L E D V A -
Sb000733_Sorbi1    A A M L P W A - - - - - - - T T T P - P G L F G N V F A P N N H Q L L Q K P L P F A G G C S G Q P R - - - - - - - - - -
Sb006176_Sorbi1    S F T L S G - - - - - - - - - - - - - S G L N L N L - - - - - - - - - - - - - - - - G A S P A M P S P P Q A L H A M S M
 
AT2G24430.1     - - - - - - - - - - - - - - - - - - - - - - - - - - A V S A S Y N G - - - - - - - E N G F G N V E M S - - - Q C M D L D
Sb000733_Sorbi1    G L G G V V A N N V V V G S G E H - - - - - - - - - - - - A M F G S S V V - - - - K V G M E C D Q Q Q Q P E Q Q L G M D
Sb006176_Sorbi1    A M G G Q T G N H H Q V M A G E H Q H Q H H Q Q Q M A T A A G L G G C V I V P G A D G G F G A D A A G G R Y Q S L D V E
 
AT2G24430.1     G - - - - Y W P S - Y - -
Sb000733_Sorbi1    E - - - S T W R T - F - -
Sb006176_Sorbi1    Q L V E R Y W P A G Y Q V
 
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