fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G24430.1 HMPVSGLNLNLGGALV at 263/316 in AT2G24430.1
EMSQCMDLDGYWPSY at 306/316 in AT2G24430.1
HMPVSGLNLNLGGALV at 263/316 in AT2G24430.2
EMSQCMDLDGYWPSY at 306/316 in AT2G24430.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm014469 GFTISGLNLNLGGGGA in 254/338 AT2G24430.2 1st_not 0.540677966 II
GVDHCMDLDNYWPSY in 329/338
Get sequence file
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G24430.1     MEQGDHQQHKKEEEALPPGFRFHPTDEELISYYLVNKIADQNFTGKAIADVDLNKSEPWE
gm014469_Glyma0 MEGT-----RAKEETLPPGFRFHPTDEELVTCYLVNKISDSNFTGRAITDVDLNKCEPWE
                **       : :**:**************:: ******:*.****:**:******.****

AT2G24430.1     LPEKAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSTTSELVGMKKT
gm014469_Glyma0 LPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFNSETSELIGMKKT
                ** ***** ************************:*************** ****:*****

AT2G24430.1     LVFYRGRAPRGEKTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEATKKYISTSSSST
gm014469_Glyma0 LVFYKGRAPRGEKSNWVMHEYRIHSKSSYRTNRQDEWVVCRVFKKSGNAKKYPSS-----
                ****:********: *******:********.:************:  :*** *:     

AT2G24430.1     SHHHNNHTRASILSTNNNNPNYSSDLLQLPPHLQPHPSLNI---------NQSLMANAVH
gm014469_Glyma0 -----NHARAV-------NP-YS---LEIEPNILPPLMMQLGDPGAHFLYGRNYM-NSAE
                     **:**        ** **   *:: *:: *   :::         .:. * *:..

AT2G24430.1     LAELSRVFRASTSTTMDSSHQQLMNYTHMP----------VSGLNLNLGG----ALVQ--
gm014469_Glyma0 LAELARVLRGGGSTS--SVNLPIQSHLSYPTSSSTGGGFTISGLNLNLGGGGATATTQPI
                ****:**:*.. **:  * :  : .:   *          :*********    * .*  

AT2G24430.1     -------PPPVVSLEDV------AAVSASYNGEN-GFGNVEMS-------------QCMD
gm014469_Glyma0 LRPMQPSPAPVHTMAQVLDANSSMMTTSSLGAENVGYG-AEMSNLNLHGNRYMGVDHCMD
                       *.** :: :*        .::* ..** *:* .***             :***

AT2G24430.1     LDGYWPSY
gm014469_Glyma0 LDNYWPSY
                **.*****
BoxShade v3.31 C (beta, 970507) Output
AT2G24430.1     M E Q G D H Q Q H K K E E E A L P P G F R F H P T D E E L I S Y Y L V N K I A D Q N F T G K A I A D V D L N K S E P W E
gm014469_Glyma0    M E G T - - - - - R A K E E T L P P G F R F H P T D E E L V T C Y L V N K I S D S N F T G R A I T D V D L N K C E P W E
 
AT2G24430.1     L P E K A K M G G K E W Y F F S L R D R K Y P T G V R T N R A T N T G Y W K T T G K D K E I F N S T T S E L V G M K K T
gm014469_Glyma0    L P G K A K M G E K E W Y F F S L R D R K Y P T G V R T N R A T N A G Y W K T T G K D K E I F N S E T S E L I G M K K T
 
AT2G24430.1     L V F Y R G R A P R G E K T C W V M H E Y R L H S K S S Y R T S K Q D E W V V C R V F K K T E A T K K Y I S T S S S S T
gm014469_Glyma0    L V F Y K G R A P R G E K S N W V M H E Y R I H S K S S Y R T N R Q D E W V V C R V F K K S G N A K K Y P S S - - - - -
 
AT2G24430.1     S H H H N N H T R A S I L S T N N N N P N Y S S D L L Q L P P H L Q P H P S L N I - - - - - - - - - N Q S L M A N A V H
gm014469_Glyma0    - - - - - N H A R A V - - - - - - - N P - Y S - - - L E I E P N I L P P L M M Q L G D P G A H F L Y G R N Y M - N S A E
 
AT2G24430.1     L A E L S R V F R A S T S T T M D S S H Q Q L M N Y T H M P - - - - - - - - - - V S G L N L N L G G - - - - A L V Q - -
gm014469_Glyma0    L A E L A R V L R G G G S T S - - S V N L P I Q S H L S Y P T S S S T G G G F T I S G L N L N L G G G G A T A T T Q P I
 
AT2G24430.1     - - - - - - - P P P V V S L E D V - - - - - - A A V S A S Y N G E N - G F G N V E M S - - - - - - - - - - - - - Q C M D
gm014469_Glyma0    L R P M Q P S P A P V H T M A Q V L D A N S S M M T T S S L G A E N V G Y G - A E M S N L N L H G N R Y M G V D H C M D
 
AT2G24430.1     L D G Y W P S Y
gm014469_Glyma0    L D N Y W P S Y
 
0