fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G28550.1 MLDLNLNADSP at 0/449 in AT2G28550.1
MLDLNLNADSP at 0/381 in AT2G28550.2
MLDLNLNADSP at 0/464 in AT2G28550.3
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm030969 MLDLNLNAEWT in 1/357 AT2G28550.2 not_not 0.414357682 III
EGGSQNLDLNLGIATP in 315/357
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G28550.1     MLDLNLNADSPESTQYGGDSYLDRQTSDNSAGNRVEESGTSTSSVINAD------GDEDS
gm030969_Glyma1 MLDLNLNAEWTDSFS-NGESPLPLEKFPDGLRNQMAESGTSNSSVVNADGSSNGGGDEDS
                ********: .:* . .*:* *  :.  :.  *:: *****.***:***      *****

AT2G28550.1     CSTRA-----FTLSFDILKVGSSSGGDESPAASASVTKEFFPV--SGDCGHLRDVEGSSS
gm030969_Glyma1 DSTRAADDVYTTFNFDILKVEGANG---------FVTKELFPVMSEGAKGHA--TSSFSG
                 ****      *:.****** .:.*          ****:***  .*  **   ... *.

AT2G28550.1     SRNWIDLSFDRIGDG----ETKLVTP-------VPTPAPVPAQVKKSRRGPRSRSSQYRG
gm030969_Glyma1 TNGFVDLSFD--GDGGNTSEMKMLQPQNQNQTQTRTQTQQPA--KKSRRGPRSRSSQYRG
                :..::*****  ***    * *:: *       . * :  **  ****************

AT2G28550.1     VTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFTLGDYEED
gm030969_Glyma1 VTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDD
                ****************************************************.*.***:*

AT2G28550.1     MKQVQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIN
gm030969_Glyma1 LKQMQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIK
                :**:*******************************************************:

AT2G28550.1     TNGREAVTNFEMSSYQNEINS----ESNNSEIDLNLGISLSTGNAPKQNGRLFHFPSNTY
gm030969_Glyma1 CNGREAVTNFEPSTYEGELKSAAINEGGSQNLDLNLGI--ATPGPPKENWGQLQFPSFPY
                 ********** *:*:.*::*    *....::******  :* ..**:*   ::*** .*

AT2G28550.1     ETQRGVSLRIDNEYMGKPVNTPLPYGSSDHRLYWNGACPSYNNPAEGRATEKRSEAEGMM
gm030969_Glyma1 NTHGGRS--------------------------------------------------SMM
                :*: * *                                                  .**

AT2G28550.1     SNWGWQRPGQTSAVRPQPPGPQPPPLFSVAAASSGFSHFRPQPPNDNATRGYFYPHP
gm030969_Glyma1 ET--------------------------------------------NVS--------
                ..                                            *.:
BoxShade v3.31 C (beta, 970507) Output
AT2G28550.1     M L D L N L N A D S P E S T Q Y G G D S Y L D R Q T S D N S A G N R V E E S G T S T S S V I N A D - - - - - - G D E D S
gm030969_Glyma1    M L D L N L N A E W T D S F S - N G E S P L P L E K F P D G L R N Q M A E S G T S N S S V V N A D G S S N G G G D E D S
 
AT2G28550.1     C S T R A - - - - - F T L S F D I L K V G S S S G G D E S P A A S A S V T K E F F P V - - S G D C G H L R D V E G S S S
gm030969_Glyma1    D S T R A A D D V Y T T F N F D I L K V E G A N G - - - - - - - - - F V T K E L F P V M S E G A K G H A - - T S S F S G
 
AT2G28550.1     S R N W I D L S F D R I G D G - - - - E T K L V T P - - - - - - - V P T P A P V P A Q V K K S R R G P R S R S S Q Y R G
gm030969_Glyma1    T N G F V D L S F D - - G D G G N T S E M K M L Q P Q N Q N Q T Q T R T Q T Q Q P A - - K K S R R G P R S R S S Q Y R G
 
AT2G28550.1     V T F Y R R T G R W E S H I W D C G K Q V Y L G G F D T A H A A A R A Y D R A A I K F R G V D A D I N F T L G D Y E E D
gm030969_Glyma1    V T F Y R R T G R W E S H I W D C G K Q V Y L G G F D T A H A A A R A Y D R A A I K F R G V D A D I N F N L S D Y E D D
 
AT2G28550.1     M K Q V Q N L S K E E F V H I L R R Q S T G F S R G S S K Y R G V T L H K C G R W E A R M G Q F L G K K A Y D K A A I N
gm030969_Glyma1    L K Q M Q N L S K E E F V H I L R R Q S T G F S R G S S K Y R G V T L H K C G R W E A R M G Q F L G K K A Y D K A A I K
 
AT2G28550.1     T N G R E A V T N F E M S S Y Q N E I N S - - - - E S N N S E I D L N L G I S L S T G N A P K Q N G R L F H F P S N T Y
gm030969_Glyma1    C N G R E A V T N F E P S T Y E G E L K S A A I N E G G S Q N L D L N L G I - - A T P G P P K E N W G Q L Q F P S F P Y
 
AT2G28550.1     E T Q R G V S L R I D N E Y M G K P V N T P L P Y G S S D H R L Y W N G A C P S Y N N P A E G R A T E K R S E A E G M M
gm030969_Glyma1    N T H G G R S - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - S M M
 
AT2G28550.1     S N W G W Q R P G Q T S A V R P Q P P G P Q P P P L F S V A A A S S G F S H F R P Q P P N D N A T R G Y F Y P H P
gm030969_Glyma1    E T - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - N V S - - - - - - - -
 
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