fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G28710.1 GKRVLCLDLNLTPLEN at 133/156 in AT2G28710.1
EDLKLELGRFIF at 145/156 in AT2G28710.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm041121 KDGDQKLNLRLDLNLT in 142/172 AT2G28710.1 1st_1st 0.401433691 Ia
PLEEDDLKLNLRTPVL in 158/172
Pt043135 SRRVLCLDLNLTPNEN in 152/177 AT2G28710.1 1st_1st 0.412186379 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G28710.1     MER---GRSDMEMINNMANCLILLSKAHQ------------NDTKSRV--------FACK
gm041121_Glyma1 MKR---GREESKL--DMANCLMLLTKVGE------------SETNYPISKGSDIGDFKCK
pt043135_POPTR_ MKRSLYAREIDSI--TMANCLVFLSKGRESYSFPSFDHAINNNSPSRV--------FECK
                *:*   .*.  .:   *****::*:*  :            .::   :        * **

AT2G28710.1     TCNKEFPSFQALGGHRASHRRS----AALEGHAP-PSPK-RVKPVKHECPICGAEFAVGQ
gm041121_Glyma1 TCNRRFSSFQALGGHRASHKKPKLMVTDLSCHQELPNPTMKQQPRMHPCPICGLEFAIGQ
pt043135_POPTR_ TCNRKFPSFQALGGHRASHKKPKL--MGGEGSFESQSPA---KPKTHECSICGLEFAIGQ
                ***:.*.************::.       .      .*    :*  * *.*** ***:**

AT2G28710.1     ALGGHMRKHRGGSGGG--GGRSLAPATA-----PVTMKKSG-GGNGKRVLCLDLNLTPLE
gm041121_Glyma1 ALGGHMRKHRTAINDGLLCGK---PSSS-----LSILKESSKDGDQKLNLRLDLNLTPLE
pt043135_POPTR_ ALGGHMRRHRAALNDQNQLADPLSPPSSDHKQVVPVVKKSN----SRRVLCLDLNLTPNE
                *******:** . ..    .    *.::        :*:*.     :  * ******* *

AT2G28710.1     NEDLKLELGR-----FIF-
gm041121_Glyma1 EDDLKLNLRTPVLNCFI--
pt043135_POPTR_ NDMELFKLGNAA---PIYS
                ::   ::*        *
BoxShade v3.31 C (beta, 970507) Output
AT2G28710.1     M E R - - - G R S D M E M I N N M A N C L I L L S K A H Q - - - - - - - - - - - - N D T K S R V - - - - - - - - F A C K
gm041121_Glyma1    M K R - - - G R E E S K L - - D M A N C L M L L T K V G E - - - - - - - - - - - - S E T N Y P I S K G S D I G D F K C K
pt043135_POPTR_    M K R S L Y A R E I D S I - - T M A N C L V F L S K G R E S Y S F P S F D H A I N N N S P S R V - - - - - - - - F E C K
 
AT2G28710.1     T C N K E F P S F Q A L G G H R A S H R R S - - - - A A L E G H A P - P S P K - R V K P V K H E C P I C G A E F A V G Q
gm041121_Glyma1    T C N R R F S S F Q A L G G H R A S H K K P K L M V T D L S C H Q E L P N P T M K Q Q P R M H P C P I C G L E F A I G Q
pt043135_POPTR_    T C N R K F P S F Q A L G G H R A S H K K P K L - - M G G E G S F E S Q S P A - - - K P K T H E C S I C G L E F A I G Q
 
AT2G28710.1     A L G G H M R K H R G G S G G G - - G G R S L A P A T A - - - - - P V T M K K S G - G G N G K R V L C L D L N L T P L E
gm041121_Glyma1    A L G G H M R K H R T A I N D G L L C G K - - - P S S S - - - - - L S I L K E S S K D G D Q K L N L R L D L N L T P L E
pt043135_POPTR_    A L G G H M R R H R A A L N D Q N Q L A D P L S P P S S D H K Q V V P V V K K S N - - - - S R R V L C L D L N L T P N E
 
AT2G28710.1     N E D L K L E L G R - - - - - F I F -
gm041121_Glyma1    E D D L K L N L R T P V L N C F I - -
pt043135_POPTR_    N D M E L F K L G N A A - - - P I Y S
 
0