fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G28710.1 GKRVLCLDLNLTPLEN at 133/156 in AT2G28710.1
EDLKLELGRFIF at 145/156 in AT2G28710.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt033774 SRRVLCLDLNLTPYEN in 151/175 AT2G28710.1 not_1st 0.401433691 II
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G28710.1     MERGRSDMEMIN-NMANCLILLSK------------AHQNDTKSRVFACKTCNKEFPSFQ
pt033774_POPTR_ MKRGLHEREIDSITMANCLMFLSKGRESYSFPSFDHAMSNISPARVFECKTCNRQFPSFQ
                *:**  : *: . .*****::***            * .* : :*** *****::*****

AT2G28710.1     ALGGHRASHRR------SAALEGHAPPSPKRVKPVKHECPICGAEFAVGQALGGHMRKHR
pt033774_POPTR_ ALGGHRASHKKPRLMGGEGSFETQSPAKPK-----THECSICGLEFAIGQALGGHMRRHR
                *********::      ..::* ::*..**     .***.*** ***:*********:**

AT2G28710.1     GGSGGGGGRSLAPATAPVT--------MKKSGGGNGKRVLCLDLNLTPLENEDLKLELGR
pt033774_POPTR_ AALNDRN--QVDPLNPPSTDDQKAVPVVKRS---NSRRVLCLDLNLTPYEN-DMELSWSS
                .. .. .  .: * ..* *        :*:*   *.:*********** ** *::*. . 

AT2G28710.1     ----FIF
pt033774_POPTR_ SSNYFV-
                    *:
BoxShade v3.31 C (beta, 970507) Output
AT2G28710.1     M E R G R S D M E M I N - N M A N C L I L L S K - - - - - - - - - - - - A H Q N D T K S R V F A C K T C N K E F P S F Q
pt033774_POPTR_    M K R G L H E R E I D S I T M A N C L M F L S K G R E S Y S F P S F D H A M S N I S P A R V F E C K T C N R Q F P S F Q
 
AT2G28710.1     A L G G H R A S H R R - - - - - - S A A L E G H A P P S P K R V K P V K H E C P I C G A E F A V G Q A L G G H M R K H R
pt033774_POPTR_    A L G G H R A S H K K P R L M G G E G S F E T Q S P A K P K - - - - - T H E C S I C G L E F A I G Q A L G G H M R R H R
 
AT2G28710.1     G G S G G G G G R S L A P A T A P V T - - - - - - - - M K K S G G G N G K R V L C L D L N L T P L E N E D L K L E L G R
pt033774_POPTR_    A A L N D R N - - Q V D P L N P P S T D D Q K A V P V V K R S - - - N S R R V L C L D L N L T P Y E N - D M E L S W S S
 
AT2G28710.1     - - - - F I F
pt033774_POPTR_    S S N Y F V -
 
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