fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G28710.1 GKRVLCLDLNLTPLEN at 133/156 in AT2G28710.1
EDLKLELGRFIF at 145/156 in AT2G28710.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt043135 SRRVLCLDLNLTPNEN in 152/177 AT2G28710.1 1st_1st 0.412186379 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G28710.1     MERGRSDMEMIN-NMANCLILLSKAHQ------------NDTKSRVFACKTCNKEFPSFQ
pt043135_POPTR_ MKRSLYAREIDSITMANCLVFLSKGRESYSFPSFDHAINNNSPSRVFECKTCNRKFPSFQ
                *:*.    *: . .*****::***.::            *:: **** *****::*****

AT2G28710.1     ALGGHRASHRR------SAALEGHAPPSPKRVKPVKHECPICGAEFAVGQALGGHMRKHR
pt043135_POPTR_ ALGGHRASHKKPKLMGGEGSFESQSPAKPK-----THECSICGLEFAIGQALGGHMRRHR
                *********::      ..::*.::*..**     .***.*** ***:*********:**

AT2G28710.1     GGSGGGG--GRSLAPATA------PVTMKKSGGGNGKRVLCLDLNLTPLENEDLKLELGR
pt043135_POPTR_ AALNDQNQLADPLSPPSSDHKQVVPV-VKKS---NSRRVLCLDLNLTPNENDMELFKLGN
                .. .. .  . .*:*.::      ** :***   *.:*********** **:   ::**.

AT2G28710.1     F--IF-
pt043135_POPTR_ AAPIYS
                   *:
BoxShade v3.31 C (beta, 970507) Output
AT2G28710.1     M E R G R S D M E M I N - N M A N C L I L L S K A H Q - - - - - - - - - - - - N D T K S R V F A C K T C N K E F P S F Q
pt043135_POPTR_    M K R S L Y A R E I D S I T M A N C L V F L S K G R E S Y S F P S F D H A I N N N S P S R V F E C K T C N R K F P S F Q
 
AT2G28710.1     A L G G H R A S H R R - - - - - - S A A L E G H A P P S P K R V K P V K H E C P I C G A E F A V G Q A L G G H M R K H R
pt043135_POPTR_    A L G G H R A S H K K P K L M G G E G S F E S Q S P A K P K - - - - - T H E C S I C G L E F A I G Q A L G G H M R R H R
 
AT2G28710.1     G G S G G G G - - G R S L A P A T A - - - - - - P V T M K K S G G G N G K R V L C L D L N L T P L E N E D L K L E L G R
pt043135_POPTR_    A A L N D Q N Q L A D P L S P P S S D H K Q V V P V - V K K S - - - N S R R V L C L D L N L T P N E N D M E L F K L G N
 
AT2G28710.1     F - - I F -
pt043135_POPTR_    A A P I Y S
 
0