Input
| Putative repression domain
|
|
AT2G28710.1 |
GKRVLCLDLNLTPLEN at 133/156 in AT2G28710.1 |
|
EDLKLELGRFIF at 145/156 in AT2G28710.1 |
Ortholog
| Putative repression domain
| Reverse top hit
| Relation
| Blast score ratio
| Type
|
Pt043135 |
SRRVLCLDLNLTPNEN in 152/177 |
AT2G28710.1 |
1st_1st |
0.412186379 |
Ia |
Pt033774 |
SRRVLCLDLNLTPYEN in 151/175 |
AT2G28710.1 |
not_1st |
0.401433691 |
II |
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.
CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)
AT2G28710.1 MERGRSDMEMIN-NMANCLILLSKAHQ------------NDTKSRVFACKTCNKEFPSFQ
pt043135_POPTR_ MKRSLYAREIDSITMANCLVFLSKGRESYSFPSFDHAINNNSPSRVFECKTCNRKFPSFQ
pt033774_POPTR_ MKRGLHEREIDSITMANCLMFLSKGRESYSFPSFDHAMSNISPARVFECKTCNRQFPSFQ
*:*. *: . .*****::***.:: * : :*** *****::*****
AT2G28710.1 ALGGHRASHRR------SAALEGHAPPSPKRVKPVKHECPICGAEFAVGQALGGHMRKHR
pt043135_POPTR_ ALGGHRASHKKPKLMGGEGSFESQSPAKPK-----THECSICGLEFAIGQALGGHMRRHR
pt033774_POPTR_ ALGGHRASHKKPRLMGGEGSFETQSPAKPK-----THECSICGLEFAIGQALGGHMRRHR
*********:: ..::* ::*..** .***.*** ***:*********:**
AT2G28710.1 GGSGGGGG--RSLAPATA------PVTMKKSGGGNGKRVLCLDLNLTPLENEDLKL-ELG
pt043135_POPTR_ AALNDQNQLADPLSPPSSDHKQVVPV-VKKS---NSRRVLCLDLNLTPNEN-DMELFKLG
pt033774_POPTR_ AALNDRNQV-DPLNPPSTDDQKAVPV-VKRS---NSRRVLCLDLNLTPYEN-DMEL-SWS
.. .. . .* *.:: ** :*:* *.:*********** ** *::* . .
AT2G28710.1 R----FIF
pt043135_POPTR_ NAAPIYS-
pt033774_POPTR_ SSSNYFV-
:
BoxShade v3.31 C (beta, 970507) Output
AT2G28710.1 |
M |
E |
R |
G |
R |
S |
D |
M |
E |
M |
I |
N |
- |
N |
M |
A |
N |
C |
L |
I |
L |
L |
S |
K |
A |
H |
Q |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
N |
D |
T |
K |
S |
R |
V |
F |
A |
C |
K |
T |
C |
N |
K |
E |
F |
P |
S |
F |
Q |
pt043135_POPTR_ |
M |
K |
R |
S |
L |
Y |
A |
R |
E |
I |
D |
S |
I |
T |
M |
A |
N |
C |
L |
V |
F |
L |
S |
K |
G |
R |
E |
S |
Y |
S |
F |
P |
S |
F |
D |
H |
A |
I |
N |
N |
N |
S |
P |
S |
R |
V |
F |
E |
C |
K |
T |
C |
N |
R |
K |
F |
P |
S |
F |
Q |
pt033774_POPTR_ |
M |
K |
R |
G |
L |
H |
E |
R |
E |
I |
D |
S |
I |
T |
M |
A |
N |
C |
L |
M |
F |
L |
S |
K |
G |
R |
E |
S |
Y |
S |
F |
P |
S |
F |
D |
H |
A |
M |
S |
N |
I |
S |
P |
A |
R |
V |
F |
E |
C |
K |
T |
C |
N |
R |
Q |
F |
P |
S |
F |
Q |
|
AT2G28710.1 |
A |
L |
G |
G |
H |
R |
A |
S |
H |
R |
R |
- |
- |
- |
- |
- |
- |
S |
A |
A |
L |
E |
G |
H |
A |
P |
P |
S |
P |
K |
R |
V |
K |
P |
V |
K |
H |
E |
C |
P |
I |
C |
G |
A |
E |
F |
A |
V |
G |
Q |
A |
L |
G |
G |
H |
M |
R |
K |
H |
R |
pt043135_POPTR_ |
A |
L |
G |
G |
H |
R |
A |
S |
H |
K |
K |
P |
K |
L |
M |
G |
G |
E |
G |
S |
F |
E |
S |
Q |
S |
P |
A |
K |
P |
K |
- |
- |
- |
- |
- |
T |
H |
E |
C |
S |
I |
C |
G |
L |
E |
F |
A |
I |
G |
Q |
A |
L |
G |
G |
H |
M |
R |
R |
H |
R |
pt033774_POPTR_ |
A |
L |
G |
G |
H |
R |
A |
S |
H |
K |
K |
P |
R |
L |
M |
G |
G |
E |
G |
S |
F |
E |
T |
Q |
S |
P |
A |
K |
P |
K |
- |
- |
- |
- |
- |
T |
H |
E |
C |
S |
I |
C |
G |
L |
E |
F |
A |
I |
G |
Q |
A |
L |
G |
G |
H |
M |
R |
R |
H |
R |
|
AT2G28710.1 |
G |
G |
S |
G |
G |
G |
G |
G |
- |
- |
R |
S |
L |
A |
P |
A |
T |
A |
- |
- |
- |
- |
- |
- |
P |
V |
T |
M |
K |
K |
S |
G |
G |
G |
N |
G |
K |
R |
V |
L |
C |
L |
D |
L |
N |
L |
T |
P |
L |
E |
N |
E |
D |
L |
K |
L |
- |
E |
L |
G |
pt043135_POPTR_ |
A |
A |
L |
N |
D |
Q |
N |
Q |
L |
A |
D |
P |
L |
S |
P |
P |
S |
S |
D |
H |
K |
Q |
V |
V |
P |
V |
- |
V |
K |
K |
S |
- |
- |
- |
N |
S |
R |
R |
V |
L |
C |
L |
D |
L |
N |
L |
T |
P |
N |
E |
N |
- |
D |
M |
E |
L |
F |
K |
L |
G |
pt033774_POPTR_ |
A |
A |
L |
N |
D |
R |
N |
Q |
V |
- |
D |
P |
L |
N |
P |
P |
S |
T |
D |
D |
Q |
K |
A |
V |
P |
V |
- |
V |
K |
R |
S |
- |
- |
- |
N |
S |
R |
R |
V |
L |
C |
L |
D |
L |
N |
L |
T |
P |
Y |
E |
N |
- |
D |
M |
E |
L |
- |
S |
W |
S |
|
AT2G28710.1 |
R |
- |
- |
- |
- |
F |
I |
F |
pt043135_POPTR_ |
N |
A |
A |
P |
I |
Y |
S |
- |
pt033774_POPTR_ |
S |
S |
S |
N |
Y |
F |
V |
- |
|
|