fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G28710.1 GKRVLCLDLNLTPLEN at 133/156 in AT2G28710.1
EDLKLELGRFIF at 145/156 in AT2G28710.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm041121 KDGDQKLNLRLDLNLT in 142/172 AT2G28710.1 1st_1st 0.401433691 Ia
PLEEDDLKLNLRTPVL in 158/172
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G28710.1     MERGRSDMEMINNMANCLILLSKAHQNDTKSRV--------FACKTCNKEFPSFQALGGH
gm041121_Glyma1 MKRGREESKL--DMANCLMLLTKVGESETNYPISKGSDIGDFKCKTCNRRFSSFQALGGH
                *:***.: ::  :*****:**:*. :.:*:  :        * *****:.*.********

AT2G28710.1     RASHRRS----AALEGHAP-PSPK-RVKPVKHECPICGAEFAVGQALGGHMRKHRGGSGG
gm041121_Glyma1 RASHKKPKLMVTDLSCHQELPNPTMKQQPRMHPCPICGLEFAIGQALGGHMRKHRTAIND
                ****::.    : *. *   *.*. : :*  * ***** ***:************ . ..

AT2G28710.1     G--GGRSLAPATAPVTMKKSG-GGNGKRVLCLDLNLTPLENEDLKLELGR-----FIF
gm041121_Glyma1 GLLCGK---PSSSLSILKESSKDGDQKLNLRLDLNLTPLEEDDLKLNLRTPVLNCFI-
                *   *:   *:::   :*:*. .*: *  * *********::****:*       **
BoxShade v3.31 C (beta, 970507) Output
AT2G28710.1     M E R G R S D M E M I N N M A N C L I L L S K A H Q N D T K S R V - - - - - - - - F A C K T C N K E F P S F Q A L G G H
gm041121_Glyma1    M K R G R E E S K L - - D M A N C L M L L T K V G E S E T N Y P I S K G S D I G D F K C K T C N R R F S S F Q A L G G H
 
AT2G28710.1     R A S H R R S - - - - A A L E G H A P - P S P K - R V K P V K H E C P I C G A E F A V G Q A L G G H M R K H R G G S G G
gm041121_Glyma1    R A S H K K P K L M V T D L S C H Q E L P N P T M K Q Q P R M H P C P I C G L E F A I G Q A L G G H M R K H R T A I N D
 
AT2G28710.1     G - - G G R S L A P A T A P V T M K K S G - G G N G K R V L C L D L N L T P L E N E D L K L E L G R - - - - - F I F
gm041121_Glyma1    G L L C G K - - - P S S S L S I L K E S S K D G D Q K L N L R L D L N L T P L E E D D L K L N L R T P V L N C F I -
 
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