fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G30340.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb008940 NHIPHRLGLGLGGVLN in 55/260 AT2G40470.1 not_not 0.533333333 III
Sb000645 not found in 207aa AT1G31320.1 not_not 0.4 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G30340.1     --------------MSREREGFGEYYETVKKIKKDPAFETTTDHAVMGIRRHVA--VPP-
Sb000645_Sorbi1 --------------------------------MRDA-------VVVMAVPGAAA------
Sb008940_Sorbi1 MQQTLSDSSARWTSTSRERVD-----EIGKKIKREP------DTAALAVAVASASTVPAD
                                                 ::.        ..:.:    *      

AT2G30340.1     -----------G--------TTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAV
Sb000645_Sorbi1 -------GAGGGKSGSGGGAGGAASAAPCAACKLLRRRCAAGCVFAPYFPPGEPHKFANV
Sb008940_Sorbi1 NHIPHRLGLGLG--------GVLNTLTPCAACKLLRRRCAQECPFAPYFSPHEPHKFAAV
                           *            : :*************  * *:***.* ****** *

AT2G30340.1     HKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSE
Sb000645_Sorbi1 HKVFGASNVSKLLQEIPVQHRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQVETLQAQ
Sb008940_Sorbi1 HKVFGASNVSKLLLEVAEGERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNALEAE
                ***********:* *:   .*.**..******* *:***:***:**** **:::::*:::

AT2G30340.1     LTTVRTEILRHKYQEATTITSLQNNFNSTTTTSSVSCDQHALASAILLPPPPPPPPTPRP
Sb000645_Sorbi1 LALAQAEMVRLR---------MSNDY-----------ILHRLKAAS--------------
Sb008940_Sorbi1 LEAVRAEILKHRYRQAGGGNRLIDD------------DAHATASFV--------------
                *  .::*::: :         : ::              *   :                

AT2G30340.1     PRLLSSQPAPPPTPPVSLPSPSMVVS-----------SSSSSNSSATNSMYNPPPSSTAG
Sb000645_Sorbi1 ------------------------------RANGGGGSSYTGSPSSMSSPKTAEPEAHCN
Sb008940_Sorbi1 ---------APASAPVHVNDVVSVVEAGQEVAATGGGASGMSTSSAVYVAEAEQPASTNH
                                                     :*  ...*:        * :   

AT2G30340.1     YSNSL-------SSDNNVHYFD-
Sb000645_Sorbi1 ATPELLDMVVDQPSMDDAHFWSY
Sb008940_Sorbi1 YSSRN-------PSEHPA-YFG-
                 :          .* . . ::.
BoxShade v3.31 C (beta, 970507) Output
AT2G30340.1     - - - - - - - - - - - - - - M S R E R E G F G E Y Y E T V K K I K K D P A F E T T T D H A V M G I R R H V A - - V P P -
Sb000645_Sorbi1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M R D A - - - - - - - V V V M A V P G A A A - - - - - -
Sb008940_Sorbi1    M Q Q T L S D S S A R W T S T S R E R V D - - - - - E I G K K I K R E P - - - - - - D T A A L A V A V A S A S T V P A D
 
AT2G30340.1     - - - - - - - - - - - G - - - - - - - - T T L N T V T P C A A C K L L R R R C A E E C P F S P Y F S P H E P H K F A A V
Sb000645_Sorbi1    - - - - - - - G A G G G K S G S G G G A G G A A S A A P C A A C K L L R R R C A A G C V F A P Y F P P G E P H K F A N V
Sb008940_Sorbi1    N H I P H R L G L G L G - - - - - - - - G V L N T L T P C A A C K L L R R R C A Q E C P F A P Y F S P H E P H K F A A V
 
AT2G30340.1     H K V F G A S N V S K M L L E V G E S Q R G D A A N S L V Y E A N L R L R D P I Y G C M G A I S A L Q H H I Q S L Q S E
Sb000645_Sorbi1    H K V F G A S N V S K L L Q E I P V Q H R G D A V S S L V Y E A N A R V R D P V Y G C V G A I S S L Q Q Q V E T L Q A Q
Sb008940_Sorbi1    H K V F G A S N V S K L L L E V A E G E R A D A A S S L V Y E A N L R L R D P V Y G C M G A I S M L Q Q Q V N A L E A E
 
AT2G30340.1     L T T V R T E I L R H K Y Q E A T T I T S L Q N N F N S T T T T S S V S C D Q H A L A S A I L L P P P P P P P P T P R P
Sb000645_Sorbi1    L A L A Q A E M V R L R - - - - - - - - - M S N D Y - - - - - - - - - - - I L H R L K A A S - - - - - - - - - - - - - -
Sb008940_Sorbi1    L E A V R A E I L K H R Y R Q A G G G N R L I D D - - - - - - - - - - - - D A H A T A S F V - - - - - - - - - - - - - -
 
AT2G30340.1     P R L L S S Q P A P P P T P P V S L P S P S M V V S - - - - - - - - - - - S S S S S N S S A T N S M Y N P P P S S T A G
Sb000645_Sorbi1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - R A N G G G G S S Y T G S P S S M S S P K T A E P E A H C N
Sb008940_Sorbi1    - - - - - - - - - A P A S A P V H V N D V V S V V E A G Q E V A A T G G G A S G M S T S S A V Y V A E A E Q P A S T N H
 
AT2G30340.1     Y S N S L - - - - - - - S S D N N V H Y F D -
Sb000645_Sorbi1    A T P E L L D M V V D Q P S M D D A H F W S Y
Sb008940_Sorbi1    Y S S R N - - - - - - - P S E H P A - Y F G -
 
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