fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G30420.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029528 not found in 79aa AT5G53200.1 1st_not 0.410480349 II
Pt023384 not found in 97aa AT5G53200.1 1st_not 0.489082969 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G30420.1     MDNTNRLRLRRGPSLRQTKFTRSRYDSEEVSSIEWEFISMTEQEEDLISRMYRLVGNRWD
gm029528_Glyma1 -----------------MSTTAT--TTSEVSSNEWKVIHMSEQEEDLIRRMYKLVGDKWN
pt023384_POPTR_ MESMDRRRRRR---RKQAKINNS--ESEEVSSIEWEFIDMSEQEEDLIYRMYRLVGERWD
                                  . . :   :.**** **:.* *:******* ***:***::*:

AT2G30420.1     LIAGRVVGRKANEIERYWIMRNSDYFSHKRR---RLNNSPFFSTSPLNLQENLKL
gm029528_Glyma1 LIAGRIPSRKAEEIERFWIMRHGDAFSVKRH-RSKAQDS----------------
pt023384_POPTR_ LIAGRIPGRKAEEIERFWIMKHREGFAEKRRLHSKAKSKTYR-------------
                *****: .***:****:***:: : *: **:   : :..
BoxShade v3.31 C (beta, 970507) Output
AT2G30420.1     M D N T N R L R L R R G P S L R Q T K F T R S R Y D S E E V S S I E W E F I S M T E Q E E D L I S R M Y R L V G N R W D
gm029528_Glyma1    - - - - - - - - - - - - - - - - - M S T T A T - - T T S E V S S N E W K V I H M S E Q E E D L I R R M Y K L V G D K W N
pt023384_POPTR_    M E S M D R R R R R R - - - R K Q A K I N N S - - E S E E V S S I E W E F I D M S E Q E E D L I Y R M Y R L V G E R W D
 
AT2G30420.1     L I A G R V V G R K A N E I E R Y W I M R N S D Y F S H K R R - - - R L N N S P F F S T S P L N L Q E N L K L
gm029528_Glyma1    L I A G R I P S R K A E E I E R F W I M R H G D A F S V K R H - R S K A Q D S - - - - - - - - - - - - - - - -
pt023384_POPTR_    L I A G R I P G R K A E E I E R F W I M K H R E G F A E K R R L H S K A K S K T Y R - - - - - - - - - - - - -
 
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