fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G30420.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029528 not found in 79aa AT5G53200.1 1st_not 0.410480349 II
Pt023384 not found in 97aa AT5G53200.1 1st_not 0.489082969 II
Pt026754 not found in 95aa AT5G53200.1 not_not 0.467248908 III
Pt039931 not found in 92aa AT5G53200.1 not_not 0.449781659 III
Pt016529 not found in 88aa AT2G46410.1 not_not 0.432314410 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G30420.1     ---MDNTNRLRLRRGPSLRQTKFTRSRYDSEEVSSIEWEFISMTEQEEDLISRMYRLVGN
gm029528_Glyma1 ---MS------------------TTATTTS-EVSSNEWKVIHMSEQEEDLIRRMYKLVGD
pt026754_POPTR_ MESMN----RRRRR----KQPKINSSESE--EVSSIEWEFINMSEQEEDLIYRMHRLVGE
pt039931_POPTR_ ---MD-----RRRR----KQAKTTTHCSDQ-EVSSIEWEFINMSEQEEDLIYRMYKLVGD
pt023384_POPTR_ MESMDR--RRRRRR----KQAKINNSESE--EVSSIEWEFIDMSEQEEDLIYRMYRLVGE
pt016529_POPTR_ ---MD-----RRRK----KQAKTTSCCSEQ-EVSSIEWEFINMSEQEEDLIYRMHNLVGD
                   *.                  .       **** **:.* *:******* **:.***:

AT2G30420.1     RWDLIAGRVVGRKANEIERYWIMRNSDYFSHKRRRLNNSPFFSTSPLNLQENLKL
gm029528_Glyma1 KWNLIAGRIPSRKAEEIERFWIMRHGDAFSVKRHRSKAQDS--------------
pt026754_POPTR_ RWDLIAGRIPGRKAEEIERFWIMKHREGFAENGKLYNEVKSRTSS----------
pt039931_POPTR_ RWALIAGRIPGRKAEEIERYWIMRHCEGFASRRKEQKRDVIPNTS----------
pt023384_POPTR_ RWDLIAGRIPGRKAEEIERFWIMKHREGFAEKRRLHSKAKSKTYR----------
pt016529_POPTR_ RWALIAGRIPGRKAEEIERFWLMRHGEGFASRRREQKRCHS--------------
                :* *****: .***:****:*:*:: : *: . :  .
BoxShade v3.31 C (beta, 970507) Output
AT2G30420.1     - - - M D N T N R L R L R R G P S L R Q T K F T R S R Y D S E E V S S I E W E F I S M T E Q E E D L I S R M Y R L V G N
gm029528_Glyma1    - - - M S - - - - - - - - - - - - - - - - - - T T A T T T S - E V S S N E W K V I H M S E Q E E D L I R R M Y K L V G D
pt026754_POPTR_    M E S M N - - - - R R R R R - - - - K Q P K I N S S E S E - - E V S S I E W E F I N M S E Q E E D L I Y R M H R L V G E
pt039931_POPTR_    - - - M D - - - - - R R R R - - - - K Q A K T T T H C S D Q - E V S S I E W E F I N M S E Q E E D L I Y R M Y K L V G D
pt023384_POPTR_    M E S M D R - - R R R R R R - - - - K Q A K I N N S E S E - - E V S S I E W E F I D M S E Q E E D L I Y R M Y R L V G E
pt016529_POPTR_    - - - M D - - - - - R R R K - - - - K Q A K T T S C C S E Q - E V S S I E W E F I N M S E Q E E D L I Y R M H N L V G D
 
AT2G30420.1     R W D L I A G R V V G R K A N E I E R Y W I M R N S D Y F S H K R R R L N N S P F F S T S P L N L Q E N L K L
gm029528_Glyma1    K W N L I A G R I P S R K A E E I E R F W I M R H G D A F S V K R H R S K A Q D S - - - - - - - - - - - - - -
pt026754_POPTR_    R W D L I A G R I P G R K A E E I E R F W I M K H R E G F A E N G K L Y N E V K S R T S S - - - - - - - - - -
pt039931_POPTR_    R W A L I A G R I P G R K A E E I E R Y W I M R H C E G F A S R R K E Q K R D V I P N T S - - - - - - - - - -
pt023384_POPTR_    R W D L I A G R I P G R K A E E I E R F W I M K H R E G F A E K R R L H S K A K S K T Y R - - - - - - - - - -
pt016529_POPTR_    R W A L I A G R I P G R K A E E I E R F W L M R H G E G F A S R R R E Q K R C H S - - - - - - - - - - - - - -
 
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