fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G30420.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt026754 not found in 95aa AT5G53200.1 not_not 0.467248908 III
Pt039931 not found in 92aa AT5G53200.1 not_not 0.449781659 III
Pt016529 not found in 88aa AT2G46410.1 not_not 0.432314410 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G30420.1     MDNTNRLRLRRGPSLRQTKFTRSRYDSEEVSSIEWEFISMTEQEEDLISRMYRLVGNRWD
pt016529_POPTR_ ---MDRRRKKQAKTTSCC-------SEQEVSSIEWEFINMSEQEEDLIYRMHNLVGDRWA
pt039931_POPTR_ ---MDRRRRKQAKTTTHC-------SDQEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWA
pt026754_POPTR_ MESMNRRRRRKQPKINSS-------ESEEVSSIEWEFINMSEQEEDLIYRMHRLVGERWD
                    :* * ::  .           ..:**********.*:******* **:.***:** 

AT2G30420.1     LIAGRVVGRKANEIERYWIMRNSDYFSHKRRRLNNSPFFSTSPLNLQENLKL
pt016529_POPTR_ LIAGRIPGRKAEEIERFWLMRHGEGFASRRREQKRCHS--------------
pt039931_POPTR_ LIAGRIPGRKAEEIERYWIMRHCEGFASRRKEQKRDVIPNTS----------
pt026754_POPTR_ LIAGRIPGRKAEEIERFWIMKHREGFAENGKLYNEVKSRTSS----------
                *****: ****:****:*:*:: : *: . :  :.
BoxShade v3.31 C (beta, 970507) Output
AT2G30420.1     M D N T N R L R L R R G P S L R Q T K F T R S R Y D S E E V S S I E W E F I S M T E Q E E D L I S R M Y R L V G N R W D
pt016529_POPTR_    - - - M D R R R K K Q A K T T S C C - - - - - - - S E Q E V S S I E W E F I N M S E Q E E D L I Y R M H N L V G D R W A
pt039931_POPTR_    - - - M D R R R R K Q A K T T T H C - - - - - - - S D Q E V S S I E W E F I N M S E Q E E D L I Y R M Y K L V G D R W A
pt026754_POPTR_    M E S M N R R R R R K Q P K I N S S - - - - - - - E S E E V S S I E W E F I N M S E Q E E D L I Y R M H R L V G E R W D
 
AT2G30420.1     L I A G R V V G R K A N E I E R Y W I M R N S D Y F S H K R R R L N N S P F F S T S P L N L Q E N L K L
pt016529_POPTR_    L I A G R I P G R K A E E I E R F W L M R H G E G F A S R R R E Q K R C H S - - - - - - - - - - - - - -
pt039931_POPTR_    L I A G R I P G R K A E E I E R Y W I M R H C E G F A S R R K E Q K R D V I P N T S - - - - - - - - - -
pt026754_POPTR_    L I A G R I P G R K A E E I E R F W I M K H R E G F A E N G K L Y N E V K S R T S S - - - - - - - - - -
 
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