fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G30424.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029528 not found in 79aa AT5G53200.1 1st_not 0.408450704 II
Pt023384 not found in 97aa AT5G53200.1 1st_not 0.497652582 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G30424.1     MDNTNRLRHLRSRKQSKFTLGDTAEVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAG
pt023384_POPTR_ MESMDR-RRRRRRKQAKINNSESEEVSSIEWEFIDMSEQEEDLIYRMYRLVGERWDLIAG
gm029528_Glyma1 ---------------MSTTATTTSEVSSNEWKVIHMSEQEEDLIRRMYKLVGDKWNLIAG
                                . .   : **.* :*:.*.*:******* **::***::*:****

AT2G30424.1     RVVGREAKDIERYWIMRNCDHCSHKRR----RVHKFYRFSISPP
pt023384_POPTR_ RIPGRKAEEIERFWIMKHREGFAEKRRLHSKAKSKTYR------
gm029528_Glyma1 RIPSRKAEEIERFWIMRHGDAFSVKRH-RSKAQDS---------
                *: .*:*::***:***:: :  : **:       .
BoxShade v3.31 C (beta, 970507) Output
AT2G30424.1     M D N T N R L R H L R S R K Q S K F T L G D T A E V N S V K W E F I N M T E Q E E D L I F R M H R L V G D R W D L I A G
pt023384_POPTR_    M E S M D R - R R R R R R K Q A K I N N S E S E E V S S I E W E F I D M S E Q E E D L I Y R M Y R L V G E R W D L I A G
gm029528_Glyma1    - - - - - - - - - - - - - - - M S T T A T T T S E V S S N E W K V I H M S E Q E E D L I R R M Y K L V G D K W N L I A G
 
AT2G30424.1     R V V G R E A K D I E R Y W I M R N C D H C S H K R R - - - - R V H K F Y R F S I S P P
pt023384_POPTR_    R I P G R K A E E I E R F W I M K H R E G F A E K R R L H S K A K S K T Y R - - - - - -
gm029528_Glyma1    R I P S R K A E E I E R F W I M R H G D A F S V K R H - R S K A Q D S - - - - - - - - -
 
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