fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G30424.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt026754 not found in 95aa AT5G53200.1 not_not 0.492957746 III
Pt039931 not found in 92aa AT5G53200.1 not_not 0.483568075 III
Pt016529 not found in 88aa AT2G46410.1 not_not 0.460093896 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G30424.1     MDNTNRLRHLRSRKQSKFTLGDTAEVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAG
pt026754_POPTR_ MESMNRRRR---RKQPKINSSESEEVSSIEWEFINMSEQEEDLIYRMHRLVGERWDLIAG
pt039931_POPTR_ ---MDRRRR---KQAKTTTHCSDQEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAG
pt016529_POPTR_ ---MDRRRK---KQAKTTSCCSEQEVSSIEWEFINMSEQEEDLIYRMHNLVGDRWALIAG
                    :* *:   ::  . .  .  **.*::******:*******:**:.***:** ****

AT2G30424.1     RVVGREAKDIERYWIMRNCDHCSHKRRRVHKFYRFSISPP
pt026754_POPTR_ RIPGRKAEEIERFWIMKHREGFAENGKLYNEVKSRTSS--
pt039931_POPTR_ RIPGRKAEEIERYWIMRHCEGFASRRKEQKRDVIPNTS--
pt016529_POPTR_ RIPGRKAEEIERFWLMRHGEGFASRRREQKRCHS------
                *: **:*::***:*:*:: :  : . :  :.
BoxShade v3.31 C (beta, 970507) Output
AT2G30424.1     M D N T N R L R H L R S R K Q S K F T L G D T A E V N S V K W E F I N M T E Q E E D L I F R M H R L V G D R W D L I A G
pt026754_POPTR_    M E S M N R R R R - - - R K Q P K I N S S E S E E V S S I E W E F I N M S E Q E E D L I Y R M H R L V G E R W D L I A G
pt039931_POPTR_    - - - M D R R R R - - - K Q A K T T T H C S D Q E V S S I E W E F I N M S E Q E E D L I Y R M Y K L V G D R W A L I A G
pt016529_POPTR_    - - - M D R R R K - - - K Q A K T T S C C S E Q E V S S I E W E F I N M S E Q E E D L I Y R M H N L V G D R W A L I A G
 
AT2G30424.1     R V V G R E A K D I E R Y W I M R N C D H C S H K R R R V H K F Y R F S I S P P
pt026754_POPTR_    R I P G R K A E E I E R F W I M K H R E G F A E N G K L Y N E V K S R T S S - -
pt039931_POPTR_    R I P G R K A E E I E R Y W I M R H C E G F A S R R K E Q K R D V I P N T S - -
pt016529_POPTR_    R I P G R K A E E I E R F W L M R H G E G F A S R R R E Q K R C H S - - - - - -
 
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