fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G30424.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029528 not found in 79aa AT5G53200.1 1st_not 0.408450704 II
Pt023384 not found in 97aa AT5G53200.1 1st_not 0.497652582 II
Pt026754 not found in 95aa AT5G53200.1 not_not 0.492957746 III
Pt039931 not found in 92aa AT5G53200.1 not_not 0.483568075 III
Pt016529 not found in 88aa AT2G46410.1 not_not 0.460093896 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G30424.1     ---MDNTNRLRHLRSRKQSKFTLGDTA-EVNSVKWEFINMTEQEEDLIFRMHRLVGDRWD
pt039931_POPTR_ ---MD-------RRRRKQAKTTTHCSDQEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWA
pt023384_POPTR_ MESMDR----RRRRRRKQAKINNSESE-EVSSIEWEFIDMSEQEEDLIYRMYRLVGERWD
pt026754_POPTR_ MESMN------RRRRRKQPKINSSESE-EVSSIEWEFINMSEQEEDLIYRMHRLVGERWD
pt016529_POPTR_ ---MD-------RRRKKQAKTTSCCSEQEVSSIEWEFINMSEQEEDLIYRMHNLVGDRWA
gm029528_Glyma1 ---MS----------------TTATTTSEVSSNEWKVIHMSEQEEDLIRRMYKLVGDKWN
                   *.                .   :  **.* :*:.*.*:******* **:.***::* 

AT2G30424.1     LIAGRVVGREAKDIERYWIMRNCDHCSHKRRRVHKFYRFSISPP
pt039931_POPTR_ LIAGRIPGRKAEEIERYWIMRHCEGFASRRKEQKRDVIPNTS--
pt023384_POPTR_ LIAGRIPGRKAEEIERFWIMKHREGFAEKRRLHSKAKSKTYR--
pt026754_POPTR_ LIAGRIPGRKAEEIERFWIMKHREGFAENGKLYNEVKSRTSS--
pt016529_POPTR_ LIAGRIPGRKAEEIERFWLMRHGEGFASRRREQKRCHS------
gm029528_Glyma1 LIAGRIPSRKAEEIERFWIMRHGDAFSVKRHRSKAQDS------
                *****: .*:*::***:*:*:: :  : . :
BoxShade v3.31 C (beta, 970507) Output
AT2G30424.1     - - - M D N T N R L R H L R S R K Q S K F T L G D T A - E V N S V K W E F I N M T E Q E E D L I F R M H R L V G D R W D
pt039931_POPTR_    - - - M D - - - - - - - R R R R K Q A K T T T H C S D Q E V S S I E W E F I N M S E Q E E D L I Y R M Y K L V G D R W A
pt023384_POPTR_    M E S M D R - - - - R R R R R R K Q A K I N N S E S E - E V S S I E W E F I D M S E Q E E D L I Y R M Y R L V G E R W D
pt026754_POPTR_    M E S M N - - - - - - R R R R R K Q P K I N S S E S E - E V S S I E W E F I N M S E Q E E D L I Y R M H R L V G E R W D
pt016529_POPTR_    - - - M D - - - - - - - R R R K K Q A K T T S C C S E Q E V S S I E W E F I N M S E Q E E D L I Y R M H N L V G D R W A
gm029528_Glyma1    - - - M S - - - - - - - - - - - - - - - - T T A T T T S E V S S N E W K V I H M S E Q E E D L I R R M Y K L V G D K W N
 
AT2G30424.1     L I A G R V V G R E A K D I E R Y W I M R N C D H C S H K R R R V H K F Y R F S I S P P
pt039931_POPTR_    L I A G R I P G R K A E E I E R Y W I M R H C E G F A S R R K E Q K R D V I P N T S - -
pt023384_POPTR_    L I A G R I P G R K A E E I E R F W I M K H R E G F A E K R R L H S K A K S K T Y R - -
pt026754_POPTR_    L I A G R I P G R K A E E I E R F W I M K H R E G F A E N G K L Y N E V K S R T S S - -
pt016529_POPTR_    L I A G R I P G R K A E E I E R F W L M R H G E G F A S R R R E Q K R C H S - - - - - -
gm029528_Glyma1    L I A G R I P S R K A E E I E R F W I M R H G D A F S V K R H R S K A Q D S - - - - - -
 
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