fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G30432.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029528 not found in 79aa AT5G53200.1 1st_not 0.475138121 II
Pt026754 not found in 95aa AT5G53200.1 1st_not 0.580110497 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G30432.1     MDNTNRLRRLHCHKQPK-FTHSSQEVSSMKWEFINMTEQEEDLIFRMYRLVGDRWDLIAR
gm029528_Glyma1 MST---------------TATTTSEVSSNEWKVIHMSEQEEDLIRRMYKLVGDKWNLIAG
pt026754_POPTR_ MESMNRRRR---RKQPKINSSESEEVSSIEWEFINMSEQEEDLIYRMHRLVGERWDLIAG
                *..                :  :.**** :*:.*:*:******* **::***::*:*** 

AT2G30432.1     RVVGREAKEIERYWIMRNCDYFS--------HK---------
gm029528_Glyma1 RIPSRKAEEIERFWIMRHGDAFS--------VKRHRSKAQDS
pt026754_POPTR_ RIPGRKAEEIERFWIMKHREGFAENGKLYNEVKSRTSS----
                *: .*:*:****:***:: : *:         *
BoxShade v3.31 C (beta, 970507) Output
AT2G30432.1     M D N T N R L R R L H C H K Q P K - F T H S S Q E V S S M K W E F I N M T E Q E E D L I F R M Y R L V G D R W D L I A R
gm029528_Glyma1    M S T - - - - - - - - - - - - - - - T A T T T S E V S S N E W K V I H M S E Q E E D L I R R M Y K L V G D K W N L I A G
pt026754_POPTR_    M E S M N R R R R - - - R K Q P K I N S S E S E E V S S I E W E F I N M S E Q E E D L I Y R M H R L V G E R W D L I A G
 
AT2G30432.1     R V V G R E A K E I E R Y W I M R N C D Y F S - - - - - - - - H K - - - - - - - - -
gm029528_Glyma1    R I P S R K A E E I E R F W I M R H G D A F S - - - - - - - - V K R H R S K A Q D S
pt026754_POPTR_    R I P G R K A E E I E R F W I M K H R E G F A E N G K L Y N E V K S R T S S - - - -
 
0