fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G34140.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt024374 not found in 161aa AT1G29160.1 not_not 0.484679665 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G34140.1     MATQDSQGIKLFGKTIAFNTRTIKNEEETHPPEQEATIAVRSSSSSDLTAEKRPDKIIAC
pt024374_POPTR_ MASQE-EGIKLFGATITLHDGQVISKED--------------QNKENPTIDKRPEKIIQC
                **:*: :****** **:::   : .:*:              ....: * :***:*** *

AT2G34140.1     PRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSKPPGRVVVG-
pt024374_POPTR_ PRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPGRGGPGG
                ****************************:********************:*****   * 

AT2G34140.1     ----MLGDGNG--VRQVELINGLLVEEWQHAAAAAHGSFRHDFPMKRLRC-YSDGQSC-
pt024374_POPTR_ YSEECLFDGSGGVIHQFEL-DGVVLEELH--LATTHGGFRQVFPVKRRRSGGSGGQNCW
                     * **.*  ::*.** :*:::** :   *::**.**: **:** *.  *.**.*
BoxShade v3.31 C (beta, 970507) Output
AT2G34140.1     M A T Q D S Q G I K L F G K T I A F N T R T I K N E E E T H P P E Q E A T I A V R S S S S S D L T A E K R P D K I I A C
pt024374_POPTR_    M A S Q E - E G I K L F G A T I T L H D G Q V I S K E D - - - - - - - - - - - - - - Q N K E N P T I D K R P E K I I Q C
 
AT2G34140.1     P R C K S M E T K F C Y F N N Y N V N Q P R H F C K G C H R Y W T A G G A L R N V P V G A G R R K S K P P G R V V V G -
pt024374_POPTR_    P R C K S M E T K F C Y F N N Y N V N Q P R H F C K G C Q R Y W T A G G A L R N V P V G A G R R K T K P P G R G G P G G
 
AT2G34140.1     - - - - M L G D G N G - - V R Q V E L I N G L L V E E W Q H A A A A A H G S F R H D F P M K R L R C - Y S D G Q S C -
pt024374_POPTR_    Y S E E C L F D G S G G V I H Q F E L - D G V V L E E L H - - L A T T H G G F R Q V F P V K R R R S G G S G G Q N C W
 
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