fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G37430.1 SKRILSLDLNLTPLEN at 147/178 in AT2G37430.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm052410 TRVVTCLDLNLTPLEN in 144/171 AT2G37430.1 1st_1st 0.426865671 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G37430.1     MKRERSDFEESLKNIDIAKCLMILAQTSMVKQIGLNQHTESHTSNQFECKTCNKRFSSFQ
gm052410_Glyma1 MKRQR-DF-KGFESIDLANCLMMLSHPQQNEKL-LQKKIE---AVEFECKTCNRKFSSFQ
                ***:* ** :.::.**:*:***:*::..  ::: *::: *   : :*******::*****

AT2G37430.1     ALGGHRASHKKPKLTVEQKDVKH-----LSNDYKGNHFHKCSICSQSFGTGQALGGHMRR
gm052410_Glyma1 ALGGHRASHKRSKLEGDHELKAHAISLSLANKPK---MHECSICGQEFSLGQALGGHMRR
                **********:.**  :::   *     *:*. *   :*:****.*.*. **********

AT2G37430.1     HRSSMTVEPSFISPMIPSMPVLKRCGSSKRILSLDLNLTPLENDLEYIFGKTFVPKIDMK
gm052410_Glyma1 HRTTIHEDFSSIKQVITQMPVLKRSNSTRVVTCLDLNLTPLENDLKLLFGK-MAPNAG-A
                **:::  : * *. :*..******..*:: : .************: :*** :.*: .  

AT2G37430.1     FVL
gm052410_Glyma1 FA-
                *.
BoxShade v3.31 C (beta, 970507) Output
AT2G37430.1     M K R E R S D F E E S L K N I D I A K C L M I L A Q T S M V K Q I G L N Q H T E S H T S N Q F E C K T C N K R F S S F Q
gm052410_Glyma1    M K R Q R - D F - K G F E S I D L A N C L M M L S H P Q Q N E K L - L Q K K I E - - - A V E F E C K T C N R K F S S F Q
 
AT2G37430.1     A L G G H R A S H K K P K L T V E Q K D V K H - - - - - L S N D Y K G N H F H K C S I C S Q S F G T G Q A L G G H M R R
gm052410_Glyma1    A L G G H R A S H K R S K L E G D H E L K A H A I S L S L A N K P K - - - M H E C S I C G Q E F S L G Q A L G G H M R R
 
AT2G37430.1     H R S S M T V E P S F I S P M I P S M P V L K R C G S S K R I L S L D L N L T P L E N D L E Y I F G K T F V P K I D M K
gm052410_Glyma1    H R T T I H E D F S S I K Q V I T Q M P V L K R S N S T R V V T C L D L N L T P L E N D L K L L F G K - M A P N A G - A
 
AT2G37430.1     F V L
gm052410_Glyma1    F A -
 
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