fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G38300.1 ASRSIDLDLSLKLRQP at 273/340 in AT2G38300.1
TTTDQTLSLSLCPGSS at 301/340 in AT2G38300.1
IGQESTLDLTL at 334/340 in AT2G38300.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt043535 KASDCNLDLDLSLKLT in 310/378 AT2G38300.1 1st_1st 0.334920634 Ib
TKVNSELSLSLYSPSS in 341/378
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G38300.1     MIPSME-----GGGKTN---REEEE----EEEEEEEEGEESKVSSNSTVEESDKKTKVRP
pt043535_POPTR_ ----MEESNHTGCSKTSASLQDHDESAGGENDEEESRPKKGGSSSNSTVEESENKSSVRP
                    **     * .**.   ::.:*    *::***.. ::.  *********::*:.***

AT2G38300.1     YVRSKVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS
pt043535_POPTR_ YVRSKLPRLRWTPELHLCFIKAVERLGGQERATPKLVLQLMNVNGLSIAHVKSHLQMYRS
                *****:*******:*** *::**************** *:**::****************

AT2G38300.1     KKIDDQGQAIAGHKHLFETSTDRNIYKLSQLPMFRGYN--HNHDSPFRYGSKISNASLWN
pt043535_POPTR_ KKVDDPSQGMADHRHLVE-SGDRNIYNLSQLPMLQGYNQYQRQNSSFRYG----DAS-WN
                **:** .*.:*.*:**.* * *****:******::***  :.::*.****    :** **

AT2G38300.1     SSSQ-----GTERSLIDQIRPGLIRNASVSNNIRG----SDYWTNNKSFQNIYSSSIS--
pt043535_POPTR_ AREHFIYNPHVGRCVIDRTRPG--SYGTVAERIYGSSNNSNWSANSGKFQMGASSLIAQS
                : .:      . *.:**: ***    .:*::.* *    *:: :*. .**   ** *:  

AT2G38300.1     ----------NHFPKLRHDHH----ERTNSVTFNSI----------QGHSRTFQKFHNGV
pt043535_POPTR_ KWKNEELKGDQQLPQSLHNNRFWQPQPSPSLDVSPLVLPQMQTKVGESSSTHFKRFLPSD
                          :::*:  *:::    : : *: ...:          :. *  *::*  . 

AT2G38300.1     EENTNHSYCSKTNGKRDASR-SIDLDLSLKLRQPEKT------ILEETETAATTTDQTLS
pt043535_POPTR_ SKSTTSTVQEWKTLKRKASDCNLDLDLSLKL-TPTKDHDSNQRSLEDS----TKVNSELS
                .:.*. :  . .. **.**  .:********  * *        **::    *..:. **

AT2G38300.1     LSLCPGSSSWKKSRLMKDEEDRTVKIGQESTLDLTL
pt043535_POPTR_ LSLYSPSSS-KLSRLKREGDGNKDHGKRASTLDLTI
                *** . *** * *** :: :... :  : ******:
BoxShade v3.31 C (beta, 970507) Output
AT2G38300.1     M I P S M E - - - - - G G G K T N - - - R E E E E - - - - E E E E E E E E G E E S K V S S N S T V E E S D K K T K V R P
pt043535_POPTR_    - - - - M E E S N H T G C S K T S A S L Q D H D E S A G G E N D E E E S R P K K G G S S S N S T V E E S E N K S S V R P
 
AT2G38300.1     Y V R S K V P R L R W T P D L H L R F V R A V E R L G G Q E R A T P K L V R Q M M N I K G L S I A H V K S H L Q M Y R S
pt043535_POPTR_    Y V R S K L P R L R W T P E L H L C F I K A V E R L G G Q E R A T P K L V L Q L M N V N G L S I A H V K S H L Q M Y R S
 
AT2G38300.1     K K I D D Q G Q A I A G H K H L F E T S T D R N I Y K L S Q L P M F R G Y N - - H N H D S P F R Y G S K I S N A S L W N
pt043535_POPTR_    K K V D D P S Q G M A D H R H L V E - S G D R N I Y N L S Q L P M L Q G Y N Q Y Q R Q N S S F R Y G - - - - D A S - W N
 
AT2G38300.1     S S S Q - - - - - G T E R S L I D Q I R P G L I R N A S V S N N I R G - - - - S D Y W T N N K S F Q N I Y S S S I S - -
pt043535_POPTR_    A R E H F I Y N P H V G R C V I D R T R P G - - S Y G T V A E R I Y G S S N N S N W S A N S G K F Q M G A S S L I A Q S
 
AT2G38300.1     - - - - - - - - - - N H F P K L R H D H H - - - - E R T N S V T F N S I - - - - - - - - - - Q G H S R T F Q K F H N G V
pt043535_POPTR_    K W K N E E L K G D Q Q L P Q S L H N N R F W Q P Q P S P S L D V S P L V L P Q M Q T K V G E S S S T H F K R F L P S D
 
AT2G38300.1     E E N T N H S Y C S K T N G K R D A S R - S I D L D L S L K L R Q P E K T - - - - - - I L E E T E T A A T T T D Q T L S
pt043535_POPTR_    S K S T T S T V Q E W K T L K R K A S D C N L D L D L S L K L - T P T K D H D S N Q R S L E D S - - - - T K V N S E L S
 
AT2G38300.1     L S L C P G S S S W K K S R L M K D E E D R T V K I G Q E S T L D L T L
pt043535_POPTR_    L S L Y S P S S S - K L S R L K R E G D G N K D H G K R A S T L D L T I
 
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