fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G38300.1 ASRSIDLDLSLKLRQP at 273/340 in AT2G38300.1
TTTDQTLSLSLCPGSS at 301/340 in AT2G38300.1
IGQESTLDLTL at 334/340 in AT2G38300.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm018511 KASDIDLDLNLSLKLN in 296/366 AT2G38300.1 1st_1st 0.342857142 Ib
EVVDSNLSLSLCSQSS in 326/366
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G38300.1     --MIPSMEGG--GKTNREEEEEEEEEEEEGE-ESK-------VSSNSTVEESDKKTKVRP
gm018511_Glyma0 MRMEEERHGSECSKTSPSNEEGCEEESEGNEDESKPNNNNGGSSSNSTVEENEKKTTVRP
                  *  . .*.  .**. .:**  ***.* .* ***        ********.:***.***

AT2G38300.1     YVRSKVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS
gm018511_Glyma0 YVRSKMPRLRWTPDLHLRFIHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS
                *****:*************::**:************* *:********************

AT2G38300.1     KKIDDQGQAIAGHKHLFETSTDRNIYKLSQLPMFRGYNHNHDSPFRYGSKISNASLWNSS
gm018511_Glyma0 KKVDTN-QVLADPRLLVETG-DRNVYNLSQLPMLQGYNPSQSSAYRYGYGDASLAIYENM
                **:* : *.:*. : *.**. ***:*:******::*** .:.*.:***   :. ::::. 

AT2G38300.1     SQG--TERSLIDQIRP---GLIRNASVSNNIRGSDYWTNNKSFQNIYSSSISN------H
gm018511_Glyma0 VHGPFMNRSSLDESGAEFCGSRLTHGTNSNIN----WIHNM-FQVDSSSSFNEPSTSKVH
                 :*   :** :*:  .   *   . ....**.    * :*  **   ***:.:      *

AT2G38300.1     FPKLRH----DHHERTNSVTFNSIQGHSRTFQKFHNGVEENTNHSYCSKTNG------KR
gm018511_Glyma0 EPKHKFFSFGGNESSSTQIKMSQVDLHLST-QPQPSAQELMPNNKF--TTNEMELKTLKR
                 ** :.    .:.. :..:.:..:: *  * *   .. *  .*:.:  .**       **

AT2G38300.1     DASRSIDLDLSLKLRQPEKTILEETETAA--TTTDQTLSLSLCPGSSSWKKSRLMK--DE
gm018511_Glyma0 KAS-DIDLDLNLSLKLNSRVSAENQGSMVDHEVVDSNLSLSLCSQSSSFSSSRLKKAQDH
                .** .*****.*.*:  .:.  *:  : .   ..*..******. ***:..*** *  *.

AT2G38300.1     EDRTVKIGQESTLDLTL
gm018511_Glyma0 SKEQGEIIRASTLDLTI
                ...  :* : ******:
BoxShade v3.31 C (beta, 970507) Output
AT2G38300.1     - - M I P S M E G G - - G K T N R E E E E E E E E E E E E G E - E S K - - - - - - - V S S N S T V E E S D K K T K V R P
gm018511_Glyma0    M R M E E E R H G S E C S K T S P S N E E G C E E E S E G N E D E S K P N N N N G G S S S N S T V E E N E K K T T V R P
 
AT2G38300.1     Y V R S K V P R L R W T P D L H L R F V R A V E R L G G Q E R A T P K L V R Q M M N I K G L S I A H V K S H L Q M Y R S
gm018511_Glyma0    Y V R S K M P R L R W T P D L H L R F I H A V Q R L G G Q E R A T P K L V L Q L M N I K G L S I A H V K S H L Q M Y R S
 
AT2G38300.1     K K I D D Q G Q A I A G H K H L F E T S T D R N I Y K L S Q L P M F R G Y N H N H D S P F R Y G S K I S N A S L W N S S
gm018511_Glyma0    K K V D T N - Q V L A D P R L L V E T G - D R N V Y N L S Q L P M L Q G Y N P S Q S S A Y R Y G Y G D A S L A I Y E N M
 
AT2G38300.1     S Q G - - T E R S L I D Q I R P - - - G L I R N A S V S N N I R G S D Y W T N N K S F Q N I Y S S S I S N - - - - - - H
gm018511_Glyma0    V H G P F M N R S S L D E S G A E F C G S R L T H G T N S N I N - - - - W I H N M - F Q V D S S S S F N E P S T S K V H
 
AT2G38300.1     F P K L R H - - - - D H H E R T N S V T F N S I Q G H S R T F Q K F H N G V E E N T N H S Y C S K T N G - - - - - - K R
gm018511_Glyma0    E P K H K F F S F G G N E S S S T Q I K M S Q V D L H L S T - Q P Q P S A Q E L M P N N K F - - T T N E M E L K T L K R
 
AT2G38300.1     D A S R S I D L D L S L K L R Q P E K T I L E E T E T A A - - T T T D Q T L S L S L C P G S S S W K K S R L M K - - D E
gm018511_Glyma0    K A S - D I D L D L N L S L K L N S R V S A E N Q G S M V D H E V V D S N L S L S L C S Q S S S F S S S R L K K A Q D H
 
AT2G38300.1     E D R T V K I G Q E S T L D L T L
gm018511_Glyma0    S K E Q G E I I R A S T L D L T I
 
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