fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G38880.6 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt041090 not found in 189aa AT2G37060.3 1st_not 0.852173913 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G38880.6     MADTPSSPAGDGGESGGS------VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQ
pt041090_POPTR_ MADNPTSPAAGSHESGGEQSPRSGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQ
                ***.*:***... ****.      **********************.****.********

AT2G38880.6     ECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREVW--
pt041090_POPTR_ ECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRELEGD
                *********:***************:*****************:****:*******:   

AT2G38880.6     ------------------------------------------------------------
pt041090_POPTR_ AKGSARGGDGSSKRDAVGGLPGQNAQFAFQGSMNYTSPQHCLHLSPKDPHIFNPGLIGKT
                                                                            

AT2G38880.6     ---------
pt041090_POPTR_ GLTKCLAKN
BoxShade v3.31 C (beta, 970507) Output
AT2G38880.6     M A D T P S S P A G D G G E S G G S - - - - - - V R E Q D R Y L P I A N I S R I M K K A L P P N G K I G K D A K D T V Q
pt041090_POPTR_    M A D N P T S P A A G S H E S G G E Q S P R S G V R E Q D R Y L P I A N I S R I M K K A L P A N G K I A K D A K D T V Q
 
AT2G38880.6     E C V S E F I S F I T S E A S D K C Q K E K R K T V N G D D L L W A M A T L G F E D Y L E P L K I Y L A R Y R E V W - -
pt041090_POPTR_    E C V S E F I S F V T S E A S D K C Q K E K R K T I N G D D L L W A M A T L G F E D Y I E P L K V Y L A R Y R E L E G D
 
AT2G38880.6     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt041090_POPTR_    A K G S A R G G D G S S K R D A V G G L P G Q N A Q F A F Q G S M N Y T S P Q H C L H L S P K D P H I F N P G L I G K T
 
AT2G38880.6     - - - - - - - - -
pt041090_POPTR_    G L T K C L A K N
 
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