fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G38880.6 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm028166 not found in 174aa AT2G37060.3 1st_not 0.826086956 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G38880.6     MADTPSSPAGD-GGES------GGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTV
gm028166_Glyma1 MSDAPASPSHESGGEQSPRGSLSGAAREQDRYLPIANISRIMKKALPPNGKIAKDAKDTM
                *:*:*:**: : ***.      .*:.**************************.******:

AT2G38880.6     QECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREVW-
gm028166_Glyma1 QECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREAEG
                ****************:*********:*****************:****:*******.  

AT2G38880.6     ------------------------------------------------------
gm028166_Glyma1 DTKGSARSGDGSARPDQVGLAGQNAQLVHQGSLNYIGLQVQPQHLVMPSMQGHE
BoxShade v3.31 C (beta, 970507) Output
AT2G38880.6     M A D T P S S P A G D - G G E S - - - - - - G G S V R E Q D R Y L P I A N I S R I M K K A L P P N G K I G K D A K D T V
gm028166_Glyma1    M S D A P A S P S H E S G G E Q S P R G S L S G A A R E Q D R Y L P I A N I S R I M K K A L P P N G K I A K D A K D T M
 
AT2G38880.6     Q E C V S E F I S F I T S E A S D K C Q K E K R K T V N G D D L L W A M A T L G F E D Y L E P L K I Y L A R Y R E V W -
gm028166_Glyma1    Q E C V S E F I S F I T S E A S E K C Q K E K R K T I N G D D L L W A M A T L G F E D Y I E P L K V Y L A R Y R E A E G
 
AT2G38880.6     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm028166_Glyma1    D T K G S A R S G D G S A R P D Q V G L A G Q N A Q L V H Q G S L N Y I G L Q V Q P Q H L V M P S M Q G H E
 
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