fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G39900.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt042160 not found in 189aa AT3G55770.5 1st_not 0.824427480 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G39900.1     MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP
pt042160_POPTR_ MSFTGTQQKCKACEKTVYPMELLSTDGVAYHKSCFKCFHCKGTLKLSNYSSMEGVLYCKP
                **********:********:****:**::***:**** ***. *:**********:**:*

AT2G39900.1     HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE
pt042160_POPTR_ HFDQLFKETGNFNKNFQSPAKS-AEKLTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLE
                **:*****:*.*.********. ::* ****.*:**: ********:***** **.**:*

AT2G39900.1     KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI
pt042160_POPTR_ KVTVESQAYHKSCFKCSHGGCAITPSNYAALEGVLYCKHHFSQLFKEKGSYNHLIKCASM
                *******.*************.*:*********:*******:**************.**:

AT2G39900.1     KRATAAATAAAAAVAAVPES
pt042160_POPTR_ KRAA----------APVPEA
                ***:          *.***:
BoxShade v3.31 C (beta, 970507) Output
AT2G39900.1     M S F T G T Q Q K C R A C E K T V Y P V E L L S A D G I S Y H K A C F K C S H C K S R L Q L S N Y S S M E G V V Y C R P
pt042160_POPTR_    M S F T G T Q Q K C K A C E K T V Y P M E L L S T D G V A Y H K S C F K C F H C K G T L K L S N Y S S M E G V L Y C K P
 
AT2G39900.1     H F E Q L F K E S G S F S K N F Q S P A K P L T D K P T P E L N R T P S R L A G M F S G T Q D K C A T C T K T V Y P I E
pt042160_POPTR_    H F D Q L F K E T G N F N K N F Q S P A K S - A E K L T P E L T R S P S K A A G M F S G T Q E K C A T C G K T A Y P L E
 
AT2G39900.1     K V T V E S Q C Y H K S C F K C S H G G C P I S P S N Y A A L E G I L Y C K H H F A Q L F K E K G S Y N H L I K S A S I
pt042160_POPTR_    K V T V E S Q A Y H K S C F K C S H G G C A I T P S N Y A A L E G V L Y C K H H F S Q L F K E K G S Y N H L I K C A S M
 
AT2G39900.1     K R A T A A A T A A A A A V A A V P E S
pt042160_POPTR_    K R A A - - - - - - - - - - A P V P E A
 
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