fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G40260.1 NKSDQDLDLSLSLKVP at 332/410 in AT2G40260.1
HQDIKSLSLSLSSSGS at 368/410 in AT2G40260.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt035782 LDSDCNLDLNLALKRS in 305/366 AT2G40260.1 1st_1st 0.263513513 Ib
ARMANTLDLTL in 361/366
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G40260.1     MRSSSQNSENSKTCLSNNIKATTKNEEDKDEEDDEEGEEDEEERSGDQSPSSNSYEEESG
pt035782_POPTR_ -MEESDNFGGSKSSYSN-------KEVEQDEGDEEEVDKISFKSRNEGVSTSNSSVEEN-
                  ..*:*  .**:. **       :* ::** *:** :: . :  .:  .:***  **. 

AT2G40260.1     SHHHDQNKKNGGSVRPYNRSKTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVK
pt035782_POPTR_ ----EKEAVSTGSVRQYIRSKMPRLRWTPDLHLCFVHAVERLGGQDRATPKLVLQMMNIK
                    :::  . **** * *** *******:**:**::******* **********:**:*

AT2G40260.1     GLSIAHVKSHLQMYRSKKTDEPNEGDQGFSFEHGAGYTYNLSQLPMLQSFDQRPSSSLGY
pt035782_POPTR_ GLSIAHVKSHLQMYRSKRSDEPNQG-QGLFFEGGDHQIYNLSQLPVLQNFNQRSSCNLRY
                *****************::****:* **: ** *    *******:**.*:**.*..* *

AT2G40260.1     GGGSWTDHRRQIYRSPWRGLTTRENTRTRQTMFSSQPGERYHGVSNSILNDKNKTISFRI
pt035782_POPTR_ GDASWRGHDHQMY-SPYKGGTAL--NRFKHGLYSS--------VSERLVIGRNNHNSLNY
                *..** .* :*:* **::* *:   .* :: ::**        **: :: .:*:  *:. 

AT2G40260.1     NSHEGVHDNNGVAGAVPRIHRSFLEGMKTFN-----KSWGQSLSSNLKS---STATIPQD
pt035782_POPTR_ DSSINIPSLN--VQATSRTHQ-FLEGVKLFQVSRQEESRPSSMESNFIAKLQERSGIDQK
                :*  .: . *  . *..* *: ****:* *:     :*  .*:.**: :   . : * *.

AT2G40260.1     HIATTLNSY--QWEN-AGVAEGSENVLKRKRLLFSDDCNKSDQDLDLSLSLK-VPRTHDN
pt035782_POPTR_ ECLNTTSSADKNWRTIQEMQKGS----KRKTL--DSDCN-----LDLNLALKRSTKDDDG
                .  .* .*   :*..   : :**    *** *  ..***     ***.*:**  .: .*.

AT2G40260.1     LGECLLEDEVKEHDDHQDIKSLSLSLSSSGSSKLDRTIRKEDQTDHKKRKISVLASPLDL
pt035782_POPTR_ LQKCVADG------------SLSVSLSSSSSSKLGRSMEGDGRRKHAR-----MANTLDL
                * :*: :.            ***:*****.****.*::. :.: .* :     :*..***

AT2G40260.1     TL
pt035782_POPTR_ TL
                **
BoxShade v3.31 C (beta, 970507) Output
AT2G40260.1     M R S S S Q N S E N S K T C L S N N I K A T T K N E E D K D E E D D E E G E E D E E E R S G D Q S P S S N S Y E E E S G
pt035782_POPTR_    - M E E S D N F G G S K S S Y S N - - - - - - - K E V E Q D E G D E E E V D K I S F K S R N E G V S T S N S S V E E N -
 
AT2G40260.1     S H H H D Q N K K N G G S V R P Y N R S K T P R L R W T P E L H I C F L Q A V E R L G G P D R A T P K L V L Q L M N V K
pt035782_POPTR_    - - - - E K E A V S T G S V R Q Y I R S K M P R L R W T P D L H L C F V H A V E R L G G Q D R A T P K L V L Q M M N I K
 
AT2G40260.1     G L S I A H V K S H L Q M Y R S K K T D E P N E G D Q G F S F E H G A G Y T Y N L S Q L P M L Q S F D Q R P S S S L G Y
pt035782_POPTR_    G L S I A H V K S H L Q M Y R S K R S D E P N Q G - Q G L F F E G G D H Q I Y N L S Q L P V L Q N F N Q R S S C N L R Y
 
AT2G40260.1     G G G S W T D H R R Q I Y R S P W R G L T T R E N T R T R Q T M F S S Q P G E R Y H G V S N S I L N D K N K T I S F R I
pt035782_POPTR_    G D A S W R G H D H Q M Y - S P Y K G G T A L - - N R F K H G L Y S S - - - - - - - - V S E R L V I G R N N H N S L N Y
 
AT2G40260.1     N S H E G V H D N N G V A G A V P R I H R S F L E G M K T F N - - - - - K S W G Q S L S S N L K S - - - S T A T I P Q D
pt035782_POPTR_    D S S I N I P S L N - - V Q A T S R T H Q - F L E G V K L F Q V S R Q E E S R P S S M E S N F I A K L Q E R S G I D Q K
 
AT2G40260.1     H I A T T L N S Y - - Q W E N - A G V A E G S E N V L K R K R L L F S D D C N K S D Q D L D L S L S L K - V P R T H D N
pt035782_POPTR_    E C L N T T S S A D K N W R T I Q E M Q K G S - - - - K R K T L - - D S D C N - - - - - L D L N L A L K R S T K D D D G
 
AT2G40260.1     L G E C L L E D E V K E H D D H Q D I K S L S L S L S S S G S S K L D R T I R K E D Q T D H K K R K I S V L A S P L D L
pt035782_POPTR_    L Q K C V A D G - - - - - - - - - - - - S L S V S L S S S S S S K L G R S M E G D G R R K H A R - - - - - M A N T L D L
 
AT2G40260.1     T L
pt035782_POPTR_    T L
 
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