fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G40260.1 NKSDQDLDLSLSLKVP at 332/410 in AT2G40260.1
HQDIKSLSLSLSSSGS at 368/410 in AT2G40260.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb016391 HHDPLDLELALDIGPS in 275/364 AT2G40260.1 1st_1st 0.193243243 Ib
ATDDTQLSLSLLPSPS in 320/364
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G40260.1     MRSSSQNSENSKTCLSNNIKATTKNEEDKDEEDDEEGEEDEEERSGDQSPSSNSYEEESG
Sb016391_Sorbi1 MEKDSSKGFDDESSADHQVLPSV-----GDGEGDDAGGADDVPRAGHDGSSSNSSTVELD
                *...*.:. :.::. .::: .:.      * *.*: *  *:  *:*.:..****   * .

AT2G40260.1     SHHHDQNKKNGG----SVRPYNRSKTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQL
Sb016391_Sorbi1 EAGGDSGRKAAGASPSSVRPYVRSKNPRLRWTPELHLCFLRAVDRLGGQDRATPKLVLQL
                .   *..:* .*    ***** ***.**********:***:**:**** ***********

AT2G40260.1     MNVKGLSIAHVKSHLQMYRSKKTDEPNEGDQGFSFE------HGAGYTYNLSQLPMLQSF
Sb016391_Sorbi1 MNVKGLSIGHVKSHLQMYRSKKIDDSGQGNTG-SWRDLHHQLHDGGQAYNFGHL------
                ********.************* *:..:*: * *:.      *..* :**:.:*      

AT2G40260.1     DQRPSSSLGYG--GGSWTDHRRQIYRSPWRGLTTRENTRTRQTMFSSQPGERYHGVSNSI
Sb016391_Sorbi1 ------SLHHGQTGAS--------------------------TILSARFGAWPH------
                      ** :*  *.*                          *::*:: *   *      

AT2G40260.1     LNDKNKTISFRINSHEGVHDNNGVAGAVPRIHRSFLEGMKTFNKSWGQSLSSNLKS----
Sb016391_Sorbi1 --------------WNNFHDPSYL------LHSRHLLGSKPYYSSTSEA-DAFLRTRAQY
                               :..** . :      :*  .* * *.: .* .:: .: *::    

AT2G40260.1     ---STATIPQDHIATTLN---SYQWENAGVAEGSENVLK--RKRLLFSDDCNKSDQDLDL
Sb016391_Sorbi1 TARATSSTP----ACTLQRCLTYQ--------NDQFIMNHHQRRLLHNED-NIHHDPLDL
                   :*:: *    * **:   :**        ..: :::  ::***..:* *  .: ***

AT2G40260.1     SLSLKVPRTHD-----NLGECLLEDEVKEHDDHQDIKS------LSLSL--------SSS
Sb016391_Sorbi1 ELALDIGPSRDKRIKRSLGCSWGRHQEEENVENQEVESATDDTQLSLSLLPSPSSVRTSS
                .*:*.:  ::*     .** .  ..: :*: ::*:::*      *****        :**

AT2G40260.1     GSSKLDRTIRKEDQTDHKKRKISVLASPLDLTL
Sb016391_Sorbi1 GGHHKVLGLNMEKGTTHPTR-----TSTLDLTI
                *. :    :. *. * * .*     :*.****:
BoxShade v3.31 C (beta, 970507) Output
AT2G40260.1     M R S S S Q N S E N S K T C L S N N I K A T T K N E E D K D E E D D E E G E E D E E E R S G D Q S P S S N S Y E E E S G
Sb016391_Sorbi1    M E K D S S K G F D D E S S A D H Q V L P S V - - - - - G D G E G D D A G G A D D V P R A G H D G S S S N S S T V E L D
 
AT2G40260.1     S H H H D Q N K K N G G - - - - S V R P Y N R S K T P R L R W T P E L H I C F L Q A V E R L G G P D R A T P K L V L Q L
Sb016391_Sorbi1    E A G G D S G R K A A G A S P S S V R P Y V R S K N P R L R W T P E L H L C F L R A V D R L G G Q D R A T P K L V L Q L
 
AT2G40260.1     M N V K G L S I A H V K S H L Q M Y R S K K T D E P N E G D Q G F S F E - - - - - - H G A G Y T Y N L S Q L P M L Q S F
Sb016391_Sorbi1    M N V K G L S I G H V K S H L Q M Y R S K K I D D S G Q G N T G - S W R D L H H Q L H D G G Q A Y N F G H L - - - - - -
 
AT2G40260.1     D Q R P S S S L G Y G - - G G S W T D H R R Q I Y R S P W R G L T T R E N T R T R Q T M F S S Q P G E R Y H G V S N S I
Sb016391_Sorbi1    - - - - - - S L H H G Q T G A S - - - - - - - - - - - - - - - - - - - - - - - - - - T I L S A R F G A W P H - - - - - -
 
AT2G40260.1     L N D K N K T I S F R I N S H E G V H D N N G V A G A V P R I H R S F L E G M K T F N K S W G Q S L S S N L K S - - - -
Sb016391_Sorbi1    - - - - - - - - - - - - - - W N N F H D P S Y L - - - - - - L H S R H L L G S K P Y Y S S T S E A - D A F L R T R A Q Y
 
AT2G40260.1     - - - S T A T I P Q D H I A T T L N - - - S Y Q W E N A G V A E G S E N V L K - - R K R L L F S D D C N K S D Q D L D L
Sb016391_Sorbi1    T A R A T S S T P - - - - A C T L Q R C L T Y Q - - - - - - - - N D Q F I M N H H Q R R L L H N E D - N I H H D P L D L
 
AT2G40260.1     S L S L K V P R T H D - - - - - N L G E C L L E D E V K E H D D H Q D I K S - - - - - - L S L S L - - - - - - - - S S S
Sb016391_Sorbi1    E L A L D I G P S R D K R I K R S L G C S W G R H Q E E E N V E N Q E V E S A T D D T Q L S L S L L P S P S S V R T S S
 
AT2G40260.1     G S S K L D R T I R K E D Q T D H K K R K I S V L A S P L D L T L
Sb016391_Sorbi1    G G H H K V L G L N M E K G T T H P T R - - - - - T S T L D L T I
 
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