fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G41130.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm006871 not found in 242aa AT2G41130.1 not_1st 0.529691211 II
Gm004229 SRTRRRLDLSLELLER in 10/184 AT2G41130.1 not_1st 0.498812351 II
Get sequence file
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G41130.1     ----MQPETSDQMLYSFLAGNEVGGGGYCVSG-DYMT---------TMQSLCGSSSSTSS
gm004229_Glyma0 MNFRSRTRRRLDLSLELLERSTRDFSEFCRNWID--SPLW---------SLSVATTRTLR
gm006871_Glyma0 --------MDNSHLLQFLPNTTTSTNN---------TPFFHHAPPHTHSTFSTNSSNNTS
                           .   .:*  .  . .          :            ::.  :: .  

AT2G41130.1     YYPLAISGIGETMA-QDRALAALRNHKEAERR-------RRERINSHLNKLRNVLSCNSK
gm004229_Glyma0 VLP------------PSVAISALSVFRRRDLRISMSSGMRSERSSQHREALNMRRPSLSS
gm006871_Glyma0 SYPFHLSQITETPSHHDRALAAMKNHKEAEKR-------RRERINSHLDQLRTLLPCNSK
                  *             . *::*:  .:. : *       * ** ..* : *.   .. *.

AT2G41130.1     TDKATLLAKVVQRVRELKQQTLETSDSDQTLLPSETDEISVLHF--GDYS---NDGHIIF
gm004229_Glyma0 QPPWSSLSPLVD-----KTETSSVSDGNA----SESDS---------------ED-----
gm006871_Glyma0 TDKASLLAKVVQRVKELKQQTSEITELET--VPSETDEITVLATTGGDYASGGDDGRLIF
                    : *: :*:     * :* . :: :     **:*.               :*     

AT2G41130.1     KASLCCEDRSDLLPDLMEILKSLNMKTLRAEMVTIGGRTRSVLVVAADKEMHGVESVHFL
gm004229_Glyma0 ---ICC-------------FNSLTRWTTLAR--------REALSVLELQG-RRVRSLSRW
gm006871_Glyma0 KASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLIVAADKE-HSIESIHFL
                   :**             ::**   *  *.        *..* *   :  : :.*:   

AT2G41130.1     QNALKSLLERSSKSLMERSSGGGGGERSKRRRALDHIIMV
gm004229_Glyma0 ELILSLLLFSASLWFL------------KAARA-------
gm006871_Glyma0 QNSLKSLLDRSSS-----------GDRSKRRRGLDRRLMS
                :  *. **  :*                *  *.
BoxShade v3.31 C (beta, 970507) Output
AT2G41130.1     - - - - M Q P E T S D Q M L Y S F L A G N E V G G G G Y C V S G - D Y M T - - - - - - - - - T M Q S L C G S S S S T S S
gm004229_Glyma0    M N F R S R T R R R L D L S L E L L E R S T R D F S E F C R N W I D - - S P L W - - - - - - - - - S L S V A T T R T L R
gm006871_Glyma0    - - - - - - - - M D N S H L L Q F L P N T T T S T N N - - - - - - - - - T P F F H H A P P H T H S T F S T N S S N N T S
 
AT2G41130.1     Y Y P L A I S G I G E T M A - Q D R A L A A L R N H K E A E R R - - - - - - - R R E R I N S H L N K L R N V L S C N S K
gm004229_Glyma0    V L P - - - - - - - - - - - - P S V A I S A L S V F R R R D L R I S M S S G M R S E R S S Q H R E A L N M R R P S L S S
gm006871_Glyma0    S Y P F H L S Q I T E T P S H H D R A L A A M K N H K E A E K R - - - - - - - R R E R I N S H L D Q L R T L L P C N S K
 
AT2G41130.1     T D K A T L L A K V V Q R V R E L K Q Q T L E T S D S D Q T L L P S E T D E I S V L H F - - G D Y S - - - N D G H I I F
gm004229_Glyma0    Q P P W S S L S P L V D - - - - - K T E T S S V S D G N A - - - - S E S D S - - - - - - - - - - - - - - - E D - - - - -
gm006871_Glyma0    T D K A S L L A K V V Q R V K E L K Q Q T S E I T E L E T - - V P S E T D E I T V L A T T G G D Y A S G G D D G R L I F
 
AT2G41130.1     K A S L C C E D R S D L L P D L M E I L K S L N M K T L R A E M V T I G G R T R S V L V V A A D K E M H G V E S V H F L
gm004229_Glyma0    - - - I C C - - - - - - - - - - - - - F N S L T R W T T L A R - - - - - - - - R E A L S V L E L Q G - R R V R S L S R W
gm006871_Glyma0    K A S L C C E D R S D L I P D L I E I L N S L H L K T L K A E M A T L G G R T R N V L I V A A D K E - H S I E S I H F L
 
AT2G41130.1     Q N A L K S L L E R S S K S L M E R S S G G G G G E R S K R R R A L D H I I M V
gm004229_Glyma0    E L I L S L L L F S A S L W F L - - - - - - - - - - - - K A A R A - - - - - - -
gm006871_Glyma0    Q N S L K S L L D R S S S - - - - - - - - - - - G D R S K R R R G L D R R L M S
 
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