fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G41130.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm051940 not found in 246aa AT2G41130.1 1st_1st 0.534441805 Ia
Gm006871 not found in 242aa AT2G41130.1 not_1st 0.529691211 II
Gm004229 SRTRRRLDLSLELLER in 10/184 AT2G41130.1 not_1st 0.498812351 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G41130.1     ----MQPETSDQMLYSFLAGNEVGGGGYCVSGDYMTTMQS-------------------L
gm051940_Glyma1 --------MDNSHLLQFLPNT-------------TTTTTTTNTPFF-HAAPHTHTMHHPL
gm004229_Glyma0 MNFRSRTRRRLDLSLELLERSTRDFSEFC-----RNWIDS---PLW------------SL
gm006871_Glyma0 --------MDNSHLLQFLPN---------------TTTSTNNTPFFHHAPPHTHST---F
                           .   .:*                 .   :                   :

AT2G41130.1     CGSSSSTSSYYPLAISGIGETMA-QDRALAALRNHKEAERR-------RRERINSHLNKL
gm051940_Glyma1 STNSSNNTNYYPFHLSQITETPSHHDRALAAMKNHKEAEKR-------RRERINSHLDHL
gm004229_Glyma0 SVATTRTLRVLP------------PSVAISALSVFRRRDLRISMSSGMRSERSSQHREAL
gm006871_Glyma0 STNSSNNTSSYPFHLSQITETPSHHDRALAAMKNHKEAEKR-------RRERINSHLDQL
                .  :: .    *             . *::*:  .:. : *       * ** ..* : *

AT2G41130.1     RNVLSCNSKTDKATLLAKVVQRVRELKQQTLETSDSDQTLLPSETDEISVLHF--GDYSN
gm051940_Glyma1 RTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELET--VPSETDEITVLSTTGGDYAS
gm004229_Glyma0 NMRRPSLSSQPPWSSLSPLVD-----KTETSSVSDGNA----SESDS-------------
gm006871_Glyma0 RTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELET--VPSETDEITVLATTGGDYAS
                .   .. *.    : *: :*:     * :* . :: :     **:*.             

AT2G41130.1     ---DGHIIFKASLCCEDRSDLLPDLMEILKSLNMKTLRAEMVTIGGRTRSVLVVAADKEM
gm051940_Glyma1 GGGDGRLIFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLVVAADKE-
gm004229_Glyma0 ----------EDICC-------------FNSLTRWTTLAR--------REALSVLELQG-
gm006871_Glyma0 GGDDGRLIFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLIVAADKE-
                           .:**             ::**   *  *.        *..* *   :  

AT2G41130.1     HGVESVHFLQNALKSLLERSSKSLMERSSGGGGGERSKRRRALDHIIMV
gm051940_Glyma1 HSIESIHFLQNSLRSILDRSSS-----------GDRSKRRRGLDRRLMS
gm004229_Glyma0 RRVRSLSRWELILSLLLFSASLWFL------------KAARA-------
gm006871_Glyma0 HSIESIHFLQNSLKSLLDRSSS-----------GDRSKRRRGLDRRLMS
                : :.*:   :  *  :*  :*                *  *.
BoxShade v3.31 C (beta, 970507) Output
AT2G41130.1     - - - - M Q P E T S D Q M L Y S F L A G N E V G G G G Y C V S G D Y M T T M Q S - - - - - - - - - - - - - - - - - - - L
gm051940_Glyma1    - - - - - - - - M D N S H L L Q F L P N T - - - - - - - - - - - - - T T T T T T T N T P F F - H A A P H T H T M H H P L
gm004229_Glyma0    M N F R S R T R R R L D L S L E L L E R S T R D F S E F C - - - - - R N W I D S - - - P L W - - - - - - - - - - - - S L
gm006871_Glyma0    - - - - - - - - M D N S H L L Q F L P N - - - - - - - - - - - - - - - T T T S T N N T P F F H H A P P H T H S T - - - F
 
AT2G41130.1     C G S S S S T S S Y Y P L A I S G I G E T M A - Q D R A L A A L R N H K E A E R R - - - - - - - R R E R I N S H L N K L
gm051940_Glyma1    S T N S S N N T N Y Y P F H L S Q I T E T P S H H D R A L A A M K N H K E A E K R - - - - - - - R R E R I N S H L D H L
gm004229_Glyma0    S V A T T R T L R V L P - - - - - - - - - - - - P S V A I S A L S V F R R R D L R I S M S S G M R S E R S S Q H R E A L
gm006871_Glyma0    S T N S S N N T S S Y P F H L S Q I T E T P S H H D R A L A A M K N H K E A E K R - - - - - - - R R E R I N S H L D Q L
 
AT2G41130.1     R N V L S C N S K T D K A T L L A K V V Q R V R E L K Q Q T L E T S D S D Q T L L P S E T D E I S V L H F - - G D Y S N
gm051940_Glyma1    R T L L P C N S K T D K A S L L A K V V Q R V K E L K Q Q T S E I T E L E T - - V P S E T D E I T V L S T T G G D Y A S
gm004229_Glyma0    N M R R P S L S S Q P P W S S L S P L V D - - - - - K T E T S S V S D G N A - - - - S E S D S - - - - - - - - - - - - -
gm006871_Glyma0    R T L L P C N S K T D K A S L L A K V V Q R V K E L K Q Q T S E I T E L E T - - V P S E T D E I T V L A T T G G D Y A S
 
AT2G41130.1     - - - D G H I I F K A S L C C E D R S D L L P D L M E I L K S L N M K T L R A E M V T I G G R T R S V L V V A A D K E M
gm051940_Glyma1    G G G D G R L I F K A S L C C E D R S D L I P D L I E I L N S L H L K T L K A E M A T L G G R T R N V L V V A A D K E -
gm004229_Glyma0    - - - - - - - - - - E D I C C - - - - - - - - - - - - - F N S L T R W T T L A R - - - - - - - - R E A L S V L E L Q G -
gm006871_Glyma0    G G D D G R L I F K A S L C C E D R S D L I P D L I E I L N S L H L K T L K A E M A T L G G R T R N V L I V A A D K E -
 
AT2G41130.1     H G V E S V H F L Q N A L K S L L E R S S K S L M E R S S G G G G G E R S K R R R A L D H I I M V
gm051940_Glyma1    H S I E S I H F L Q N S L R S I L D R S S S - - - - - - - - - - - G D R S K R R R G L D R R L M S
gm004229_Glyma0    R R V R S L S R W E L I L S L L L F S A S L W F L - - - - - - - - - - - - K A A R A - - - - - - -
gm006871_Glyma0    H S I E S I H F L Q N S L K S L L D R S S S - - - - - - - - - - - G D R S K R R R G L D R R L M S
 
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