Input
| Putative repression domain
|
|
AT2G41690.1 |
EDEGLKLFGVKLE at 236/244 in AT2G41690.1 |
|
Ortholog
| Putative repression domain
| Reverse top hit
| Relation
| Blast score ratio
| Type
|
Pt044842 |
EDERPKLFGVRLEAE in 194/228 |
AT2G41690.1 |
1st_1st |
0.475687103 |
Ia |
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.
CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)
AT2G41690.1 -MEDAG--EHLRCNDNVNDEERLPLEFMIGNSTSTAELQPPPPFLVKTYKVVEDPTTDGV
pt044842_POPTR_ MANDKGLLEYVR------------------KST-------PPPFLLKTYMLVEDPATDEV
:* * *::* :** *****:*** :****:** *
AT2G41690.1 ISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFR
pt044842_POPTR_ ISWNEEGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNDMFR
***** ***********************.*****************:* ****.*:***
AT2G41690.1 KGQRELMSNIRRRKSQHWSHNKSNHQVVPTTTMVNQEGHQRIGIDHHHEDQQSSATSSSF
pt044842_POPTR_ KGERELLCQIRRRKA--WS---SKQQPIAPIQVTTQE---------FEEDQRSSSTSSSS
**:***:.:*****: ** *::* :.. :..** ..***:**:****
AT2G41690.1 VYTALLDENKCLKNENELLSCELGKTKKKCKQLMELVERYRGEDEDATDESDDEEDEGLK
pt044842_POPTR_ EYTTLVDENKRLKKENGVLSTELTSMNRKCKELLDLVAKYAHLEK-------EEEDERPK
**:*:**** **:** :** ** . ::***:*::** :* :: :**** *
AT2G41690.1 LFGVKLE---------------------------
pt044842_POPTR_ LFGVRLEAEGDRERKRKRAEISESASILLSQSCI
****:**
BoxShade v3.31 C (beta, 970507) Output
AT2G41690.1 |
- |
M |
E |
D |
A |
G |
- |
- |
E |
H |
L |
R |
C |
N |
D |
N |
V |
N |
D |
E |
E |
R |
L |
P |
L |
E |
F |
M |
I |
G |
N |
S |
T |
S |
T |
A |
E |
L |
Q |
P |
P |
P |
P |
F |
L |
V |
K |
T |
Y |
K |
V |
V |
E |
D |
P |
T |
T |
D |
G |
V |
pt044842_POPTR_ |
M |
A |
N |
D |
K |
G |
L |
L |
E |
Y |
V |
R |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
K |
S |
T |
- |
- |
- |
- |
- |
- |
- |
P |
P |
P |
F |
L |
L |
K |
T |
Y |
M |
L |
V |
E |
D |
P |
A |
T |
D |
E |
V |
|
AT2G41690.1 |
I |
S |
W |
N |
E |
Y |
G |
T |
G |
F |
V |
V |
W |
Q |
P |
A |
E |
F |
A |
R |
D |
L |
L |
P |
T |
L |
F |
K |
H |
C |
N |
F |
S |
S |
F |
V |
R |
Q |
L |
N |
T |
Y |
G |
F |
R |
K |
V |
T |
T |
I |
R |
W |
E |
F |
S |
N |
E |
M |
F |
R |
pt044842_POPTR_ |
I |
S |
W |
N |
E |
E |
G |
T |
G |
F |
V |
V |
W |
Q |
P |
A |
E |
F |
A |
R |
D |
L |
L |
P |
T |
L |
F |
K |
H |
S |
N |
F |
S |
S |
F |
V |
R |
Q |
L |
N |
T |
Y |
G |
F |
R |
K |
V |
A |
T |
S |
R |
W |
E |
F |
C |
N |
D |
M |
F |
R |
|
AT2G41690.1 |
K |
G |
Q |
R |
E |
L |
M |
S |
N |
I |
R |
R |
R |
K |
S |
Q |
H |
W |
S |
H |
N |
K |
S |
N |
H |
Q |
V |
V |
P |
T |
T |
T |
M |
V |
N |
Q |
E |
G |
H |
Q |
R |
I |
G |
I |
D |
H |
H |
H |
E |
D |
Q |
Q |
S |
S |
A |
T |
S |
S |
S |
F |
pt044842_POPTR_ |
K |
G |
E |
R |
E |
L |
L |
C |
Q |
I |
R |
R |
R |
K |
A |
- |
- |
W |
S |
- |
- |
- |
S |
K |
Q |
Q |
P |
I |
A |
P |
I |
Q |
V |
T |
T |
Q |
E |
- |
- |
- |
- |
- |
- |
- |
- |
- |
F |
E |
E |
D |
Q |
R |
S |
S |
S |
T |
S |
S |
S |
S |
|
AT2G41690.1 |
V |
Y |
T |
A |
L |
L |
D |
E |
N |
K |
C |
L |
K |
N |
E |
N |
E |
L |
L |
S |
C |
E |
L |
G |
K |
T |
K |
K |
K |
C |
K |
Q |
L |
M |
E |
L |
V |
E |
R |
Y |
R |
G |
E |
D |
E |
D |
A |
T |
D |
E |
S |
D |
D |
E |
E |
D |
E |
G |
L |
K |
pt044842_POPTR_ |
E |
Y |
T |
T |
L |
V |
D |
E |
N |
K |
R |
L |
K |
K |
E |
N |
G |
V |
L |
S |
T |
E |
L |
T |
S |
M |
N |
R |
K |
C |
K |
E |
L |
L |
D |
L |
V |
A |
K |
Y |
A |
H |
L |
E |
K |
- |
- |
- |
- |
- |
- |
- |
E |
E |
E |
D |
E |
R |
P |
K |
|
AT2G41690.1 |
L |
F |
G |
V |
K |
L |
E |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
pt044842_POPTR_ |
L |
F |
G |
V |
R |
L |
E |
A |
E |
G |
D |
R |
E |
R |
K |
R |
K |
R |
A |
E |
I |
S |
E |
S |
A |
S |
I |
L |
L |
S |
Q |
S |
C |
I |
|
|