fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G41940.1 VQDHVSLDLHL at 251/257 in AT2G41940.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt044683 VQDRVSLDLHL in 228/233 AT2G41940.1 1st_1st 0.336225596 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G41940.1     MDETNGRRETHDFMNVNVESFSQLPFIRRTPPKEKAAIIRLFGQELVGDNSDNLSAEPSD
pt044683_POPTR_ MDKV--ERETHDFM--NVESFSQLPFIRPAPIKEKG--IRLFGIEF-GSNKESPAADESD
                **:.  .*******  ************ :* ***.  ***** *: *.*.:. :*: **

AT2G41940.1     HQTTTKNDESSENIKDKDKEKDKDKDKDNNNNRRFECHYCFRNFPTSQALGGHQNAHKRE
pt044683_POPTR_ ---------SAETNEDAAKE-----NESSDNNRRFECHYCCRNFPTSQALGGHQNAHKRE
                         *:*. :*  **     ::..:********** *******************

AT2G41940.1     RQHAKRGSMTSYLHHHQPHDPHHIYGFLNNHHHR---------HYPSWT--TEARSYYGG
pt044683_POPTR_ RQHAKRAHLQSAMIHNSLSDAHY-YGILN---YRIDSISTAAMTHPSWNSHTSTNRYYGG
                ******. : * : *:.  *.*: **:**   :*          :***.  *.:. ****

AT2G41940.1     GGHQTPSYYSRNTLAPPSSNPPTINGSPLGLWRVPPSTSTNTIQGVYSS-----------
pt044683_POPTR_ QG----SY---------SQQP--INGSPLGLWRIPAVHGSATLQHPDRSVHPLPSFSGEG
                 *    **         *.:*  **********:*.  .: *:*    *           

AT2G41940.1     ---SPASAFRSHEQETNKEPNNWPYRLMKPNVQDHVSLDLHL
pt044683_POPTR_ LKPSPAGGSSSH--------GRYGYE-SKSSVQDRVSLDLHL
                   ***..  **        ..: *.  *..***:*******
BoxShade v3.31 C (beta, 970507) Output
AT2G41940.1     M D E T N G R R E T H D F M N V N V E S F S Q L P F I R R T P P K E K A A I I R L F G Q E L V G D N S D N L S A E P S D
pt044683_POPTR_    M D K V - - E R E T H D F M - - N V E S F S Q L P F I R P A P I K E K G - - I R L F G I E F - G S N K E S P A A D E S D
 
AT2G41940.1     H Q T T T K N D E S S E N I K D K D K E K D K D K D K D N N N N R R F E C H Y C F R N F P T S Q A L G G H Q N A H K R E
pt044683_POPTR_    - - - - - - - - - S A E T N E D A A K E - - - - - N E S S D N N R R F E C H Y C C R N F P T S Q A L G G H Q N A H K R E
 
AT2G41940.1     R Q H A K R G S M T S Y L H H H Q P H D P H H I Y G F L N N H H H R - - - - - - - - - H Y P S W T - - T E A R S Y Y G G
pt044683_POPTR_    R Q H A K R A H L Q S A M I H N S L S D A H Y - Y G I L N - - - Y R I D S I S T A A M T H P S W N S H T S T N R Y Y G G
 
AT2G41940.1     G G H Q T P S Y Y S R N T L A P P S S N P P T I N G S P L G L W R V P P S T S T N T I Q G V Y S S - - - - - - - - - - -
pt044683_POPTR_    Q G - - - - S Y - - - - - - - - - S Q Q P - - I N G S P L G L W R I P A V H G S A T L Q H P D R S V H P L P S F S G E G
 
AT2G41940.1     - - - S P A S A F R S H E Q E T N K E P N N W P Y R L M K P N V Q D H V S L D L H L
pt044683_POPTR_    L K P S P A G G S S S H - - - - - - - - G R Y G Y E - S K S S V Q D R V S L D L H L
 
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