fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G42940.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm038768 not found in 253aa AT2G42940.1 1st_1st 0.564732142 Ia
Pt037731 not found in 266aa AT2G42940.1 1st_1st 0.611607142 Ia
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G42940.1     MAGGTALTPTSVGSKSVPMRNHEATERGNTNNN-------LRALPKAVQPVSS--IEGEM
pt037731_POPTR_ MAGAADLTFPSLGSERI-MDRSQGLEKVNNHRPSIEAILMTPKLPKAVPPVSS-APDGET
gm038768_Glyma1 MFGE--------------MDRKQEQDKGNSNMSGIDVALISPKVPKAVSPVSSAAAEGDT
                * *               * . :  :: *.:            :**** ****   :*: 

AT2G42940.1     A-KRPRGRPAGSKNKPKPPIIVTHDSPNSLRANAVEISSGCDICETLSDFARRKQRGLCI
pt037731_POPTR_ MIRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVCESLANFARRKQRGISV
gm038768_Glyma1 L-RRPRGRPAGSKNKPKPPIIVTRDSANALKAHAMEVSSGCDVNESLLNFARRKQRGLYI
                  :********************:**.*:*:*:*:*:*****: *:* :********: :

AT2G42940.1     LSANGCVTNVTLRQPASSGAIVTLHGRYEILSLLGSILPPPAPLGITGLTIYLAGPQGQV
pt037731_POPTR_ LSGSGCVTNVTLRQPTSSGAIVTLHGRFEILSLLGSVLPPPAPQGITGLTIYLAGAQGQV
gm038768_Glyma1 LNGTGCVTNVTLRQPGSAGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQV
                *...*********** *:*********:********:****** ***********.****

AT2G42940.1     VGGGVVGGLIASGPVVLMAASFMNAVFDRLPMDDDE-AASMQNQQYYQNGRSRPLD--DI
pt037731_POPTR_ VGGGVVGALIASGPVVIMAASFMKATFDRLPLDDDEITAAVQN-QHYQNGRHHHLDISDL
gm038768_Glyma1 VGGAVVGALIASGPLVIMAASFMHATFDRLPLEDDELAAAMQN-QHYQNGRTHHLDISDL
                ***.***.******:*:******:*.*****::*** :*::** *:***** : **  *:

AT2G42940.1     HGLPQNLLTNGNSASDIYSWGPAQRVMSKP
pt037731_POPTR_ YGMPQNLLTNGAVTPEIYSWTPG-RTMSKS
gm038768_Glyma1 YAIPQNLLMNGTMPPEIYSWAPG-RNFSKT
                :.:***** **  ..:**** *. * :**.
BoxShade v3.31 C (beta, 970507) Output
AT2G42940.1     M A G G T A L T P T S V G S K S V P M R N H E A T E R G N T N N N - - - - - - - L R A L P K A V Q P V S S - - I E G E M
pt037731_POPTR_    M A G A A D L T F P S L G S E R I - M D R S Q G L E K V N N H R P S I E A I L M T P K L P K A V P P V S S - A P D G E T
gm038768_Glyma1    M F G E - - - - - - - - - - - - - - M D R K Q E Q D K G N S N M S G I D V A L I S P K V P K A V S P V S S A A A E G D T
 
AT2G42940.1     A - K R P R G R P A G S K N K P K P P I I V T H D S P N S L R A N A V E I S S G C D I C E T L S D F A R R K Q R G L C I
pt037731_POPTR_    M I R R P R G R P A G S K N K P K P P I I V T R D S A N A L R A H A M E V S S G C D V C E S L A N F A R R K Q R G I S V
gm038768_Glyma1    L - R R P R G R P A G S K N K P K P P I I V T R D S A N A L K A H A M E V S S G C D V N E S L L N F A R R K Q R G L Y I
 
AT2G42940.1     L S A N G C V T N V T L R Q P A S S G A I V T L H G R Y E I L S L L G S I L P P P A P L G I T G L T I Y L A G P Q G Q V
pt037731_POPTR_    L S G S G C V T N V T L R Q P T S S G A I V T L H G R F E I L S L L G S V L P P P A P Q G I T G L T I Y L A G A Q G Q V
gm038768_Glyma1    L N G T G C V T N V T L R Q P G S A G A I V T L H G R F E I L S L L G S I L P P P A P P G I T G L T I Y L A G A Q G Q V
 
AT2G42940.1     V G G G V V G G L I A S G P V V L M A A S F M N A V F D R L P M D D D E - A A S M Q N Q Q Y Y Q N G R S R P L D - - D I
pt037731_POPTR_    V G G G V V G A L I A S G P V V I M A A S F M K A T F D R L P L D D D E I T A A V Q N - Q H Y Q N G R H H H L D I S D L
gm038768_Glyma1    V G G A V V G A L I A S G P L V I M A A S F M H A T F D R L P L E D D E L A A A M Q N - Q H Y Q N G R T H H L D I S D L
 
AT2G42940.1     H G L P Q N L L T N G N S A S D I Y S W G P A Q R V M S K P
pt037731_POPTR_    Y G M P Q N L L T N G A V T P E I Y S W T P G - R T M S K S
gm038768_Glyma1    Y A I P Q N L L M N G T M P P E I Y S W A P G - R N F S K T
 
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