fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G42940.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb027062 not found in 595aa AT2G45430.1 1st_not 0.417410714 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G42940.1     MAGGTALTPTSVGSKSVPMRNHEATERG------NTNNNLRALPKAVQPVSSI---EGEM
Sb027062_Sorbi1 ------------DNLLINMRNHMQFRRKFDLHDTNSSKRWKKRAKSLNHLSCVCVRADQL
                            ..  : ****   .*       *:.:. :  .*::: :*.:    .::

AT2G42940.1     AKRPRGRPAGSKNKPKPPI--------IVTHDSPNSLRANAVEISSGCDICETLSDFARR
Sb027062_Sorbi1 LERRRTATGGAR---VPSVGCFWRQLHVAEQVRRQSLEEAWIHSAGGGELRRLLRTRENS
                 :* *  ..*::    *.:        :. :   :**.   :. :.* :: . *    . 

AT2G42940.1     KQRGLCILSANGCVTNVTL--RQPASSGAIVTLHG--------------RYEILSLLGSI
Sb027062_Sorbi1 CTVGLCL-----CSEHVILLQRQP-------LVHGVGERRCHYHHRPSRRERADDAAAHH
                   ***:     *  :* *  ***        :**              * .  .  .  

AT2G42940.1     LPPPA--------PLGITGLTIYLAG--------------------PQGQVVGGGVVGGL
Sb027062_Sorbi1 LPLPAGKVDGEARGFGRRGRREERAGEGEDLEAAVESDDGALGGRLPQGDVGDGA--GAA
                ** **         :*  *     **                    ***:* .*.  *. 

AT2G42940.1     IASGPVVLMAASFMNAVFD----------------RLPMDDDEAASMQNQQYYQNGRSR-
Sb027062_Sorbi1 EDADPALPAARERRDALGDVAAPGHLHDVRPERVGAVPGDDD-------------GRLRL
                  :.*.:  * .  :*: *                 :* ***             ** * 

AT2G42940.1     ---------------------PLDDIHGLPQNLLTNGNSAS------------------D
Sb027062_Sorbi1 VLGPRRPAPRAARGAVSSAVWPAATRRGNQRQLVASTAAAATPVAVSAVLVIMLVVVALD
                                     *    :*  ::*::.  :*:                  *

AT2G42940.1     I-----YSWGPA---------QRVM-------------------------------SKP-
Sb027062_Sorbi1 VAAGAEHPWPAATMVVLGLELQLVMLLLLLLLEMVMEVAGVEWWRKMVTVYGCCDRIHPL
                :     :.* .*         * **                                :* 

AT2G42940.1     ------
Sb027062_Sorbi1 TGRIAN
BoxShade v3.31 C (beta, 970507) Output
AT2G42940.1     M A G G T A L T P T S V G S K S V P M R N H E A T E R G - - - - - - N T N N N L R A L P K A V Q P V S S I - - - E G E M
Sb027062_Sorbi1    - - - - - - - - - - - - D N L L I N M R N H M Q F R R K F D L H D T N S S K R W K K R A K S L N H L S C V C V R A D Q L
 
AT2G42940.1     A K R P R G R P A G S K N K P K P P I - - - - - - - - I V T H D S P N S L R A N A V E I S S G C D I C E T L S D F A R R
Sb027062_Sorbi1    L E R R R T A T G G A R - - - V P S V G C F W R Q L H V A E Q V R R Q S L E E A W I H S A G G G E L R R L L R T R E N S
 
AT2G42940.1     K Q R G L C I L S A N G C V T N V T L - - R Q P A S S G A I V T L H G - - - - - - - - - - - - - - R Y E I L S L L G S I
Sb027062_Sorbi1    C T V G L C L - - - - - C S E H V I L L Q R Q P - - - - - - - L V H G V G E R R C H Y H H R P S R R E R A D D A A A H H
 
AT2G42940.1     L P P P A - - - - - - - - P L G I T G L T I Y L A G - - - - - - - - - - - - - - - - - - - - P Q G Q V V G G G V V G G L
Sb027062_Sorbi1    L P L P A G K V D G E A R G F G R R G R R E E R A G E G E D L E A A V E S D D G A L G G R L P Q G D V G D G A - - G A A
 
AT2G42940.1     I A S G P V V L M A A S F M N A V F D - - - - - - - - - - - - - - - - R L P M D D D E A A S M Q N Q Q Y Y Q N G R S R -
Sb027062_Sorbi1    E D A D P A L P A A R E R R D A L G D V A A P G H L H D V R P E R V G A V P G D D D - - - - - - - - - - - - - G R L R L
 
AT2G42940.1     - - - - - - - - - - - - - - - - - - - - - P L D D I H G L P Q N L L T N G N S A S - - - - - - - - - - - - - - - - - - D
Sb027062_Sorbi1    V L G P R R P A P R A A R G A V S S A V W P A A T R R G N Q R Q L V A S T A A A A T P V A V S A V L V I M L V V V A L D
 
AT2G42940.1     I - - - - - Y S W G P A - - - - - - - - - Q R V M - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - S K P -
Sb027062_Sorbi1    V A A G A E H P W P A A T M V V L G L E L Q L V M L L L L L L L E M V M E V A G V E W W R K M V T V Y G C C D R I H P L
 
AT2G42940.1     - - - - - -
Sb027062_Sorbi1    T G R I A N
 
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