fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G44840.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm006738 not found in 195aa AT2G44840.1 1st_1st 0.443609022 Ia
Pt016236 not found in 226aa AT2G44840.1 1st_1st 0.476190476 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G44840.1     MSSSDSVNNGVNSR----------------------MYFRNPSFSNVILNDNWSDLPLSV
pt016236_POPTR_ MFGEKSLESGFDVL---ECNINTVASTSNVNAPT---FYKSLSFSNIYSTESWGDLPLKQ
gm006738_Glyma0 -MSSHALNTNVNALDHFEIPVTTPFQDVSASVPSIAAFCRSSSFRNIFLTENWAELPLKE
                  ...:::...:                         : :. ** *:  .:.*.:***. 

AT2G44840.1     DDSQDMAIYNTLRDAVSSGWTPSV-------------PPVTSPAEENKPPATKAS---GS
pt016236_POPTR_ DDSEDMIVYNALRDAVNFGWLPSILSLQSNMTTTTEEFPQTAVPLEVAPRES------GP
gm006738_Glyma0 NDTNDMVIYGALRDAAATGWFPANGNEVSNVS--------VAVKMENEGQNSKTTAARGT
                :*::** :*.:****.  ** *:                 .:   *     :      *.

AT2G44840.1     HAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGS
pt016236_POPTR_ QPLKEKGLQYKGVRRRPWGKYAAEIRDPKKNGARMWLGTYETPEDAALAYDRAAFKMRGS
gm006738_Glyma0 RTPPKKGLSYRGVRRRPWGKYAAEIRDTKRNGVRVWLGTYETAEDAALAYDRAAFKMRGS
                :.  :**:.*:*********:******.*:**.*:*******.****:*******::***

AT2G44840.1     KAKLNFPHLIGSCK-YEPVRIRPRRR-SPEP----SVSDQLTSEQKRESHVDDGESSLVV
pt016236_POPTR_ KAKLNFPHLIGSNNNWEPTRVTSKKRSSPEPSSSISISDYDSPRWTKQSKISSG------
gm006738_Glyma0 KAKLNFPHLIGSDH--EPIKVTLKKH----------------------------------
                ************ :  ** ::  :::                                  

AT2G44840.1     PELDFTVDQFYFDGSLLMDQSECSYSDNRI
pt016236_POPTR_ ---------------------ICFH-----
gm006738_Glyma0 ------------------------------
BoxShade v3.31 C (beta, 970507) Output
AT2G44840.1     M S S S D S V N N G V N S R - - - - - - - - - - - - - - - - - - - - - - M Y F R N P S F S N V I L N D N W S D L P L S V
pt016236_POPTR_    M F G E K S L E S G F D V L - - - E C N I N T V A S T S N V N A P T - - - F Y K S L S F S N I Y S T E S W G D L P L K Q
gm006738_Glyma0    - M S S H A L N T N V N A L D H F E I P V T T P F Q D V S A S V P S I A A F C R S S S F R N I F L T E N W A E L P L K E
 
AT2G44840.1     D D S Q D M A I Y N T L R D A V S S G W T P S V - - - - - - - - - - - - - P P V T S P A E E N K P P A T K A S - - - G S
pt016236_POPTR_    D D S E D M I V Y N A L R D A V N F G W L P S I L S L Q S N M T T T T E E F P Q T A V P L E V A P R E S - - - - - - G P
gm006738_Glyma0    N D T N D M V I Y G A L R D A A A T G W F P A N G N E V S N V S - - - - - - - - V A V K M E N E G Q N S K T T A A R G T
 
AT2G44840.1     H A P R Q K G M Q Y R G V R R R P W G K F A A E I R D P K K N G A R V W L G T Y E T P E D A A V A Y D R A A F Q L R G S
pt016236_POPTR_    Q P L K E K G L Q Y K G V R R R P W G K Y A A E I R D P K K N G A R M W L G T Y E T P E D A A L A Y D R A A F K M R G S
gm006738_Glyma0    R T P P K K G L S Y R G V R R R P W G K Y A A E I R D T K R N G V R V W L G T Y E T A E D A A L A Y D R A A F K M R G S
 
AT2G44840.1     K A K L N F P H L I G S C K - Y E P V R I R P R R R - S P E P - - - - S V S D Q L T S E Q K R E S H V D D G E S S L V V
pt016236_POPTR_    K A K L N F P H L I G S N N N W E P T R V T S K K R S S P E P S S S I S I S D Y D S P R W T K Q S K I S S G - - - - - -
gm006738_Glyma0    K A K L N F P H L I G S D H - - E P I K V T L K K H - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT2G44840.1     P E L D F T V D Q F Y F D G S L L M D Q S E C S Y S D N R I
pt016236_POPTR_    - - - - - - - - - - - - - - - - - - - - - I C F H - - - - -
gm006738_Glyma0    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
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