fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G45190.1 LPASNQLQLQLGPHSY at 74/229 in AT2G45190.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm001387 not found in 215aa AT2G45190.1 1st_1st 0.652370203 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT2G45190.1     MSMSSMSSPSSAVCSPD-HFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTN
gm001387_Glyma0 -----MSSSSTSF-SPDQHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTN
                     ***.*::. *** *:****:****:****:*:***.** ************ ***

AT2G45190.1     LLSVNMRSYVLPASNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSF
gm001387_Glyma0 LLSVNMRGLLLPSANQLHLG---HSFFTPQNLLEEIRNAPS--TNMMMNQLPNPNDLVMS
                *******. :**::***:*    **:*.**::***:*:***  . ***** *. **:   

AT2G45190.1     MDLHQQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNW
gm001387_Glyma0 TMRGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW
                      .* **.*..*******************:*************************

AT2G45190.1     AHFPHIHFGLVPDNQPVKKTNMPQQEGEDNMVMKEGFYAPAAANVGVTPY
gm001387_Glyma0 AHFPHIHFGLMPDNQPVKKANV-RQEAED-VLMKDGFFAP--ANVGVSPY
                **********:********:*: :**.** ::**:**:**  *****:**
BoxShade v3.31 C (beta, 970507) Output
AT2G45190.1     M S M S S M S S P S S A V C S P D - H F S P S D H L C Y V Q C N F C Q T I L A V N V P Y T S L F K T V T V R C G C C T N
gm001387_Glyma0    - - - - - M S S S S T S F - S P D Q H L S P S D Q L C Y V H C N F C D T V L A V S V P C T S L F K T V T V R C G H C T N
 
AT2G45190.1     L L S V N M R S Y V L P A S N Q L Q L Q L G P H S Y F N P Q D I L E E L R D A P S N M N M M M M N Q H P T M N D I P S F
gm001387_Glyma0    L L S V N M R G L L L P S A N Q L H L G - - - H S F F T P Q N L L E E I R N A P S - - T N M M M N Q L P N P N D L V M S
 
AT2G45190.1     M D L H Q Q H E I P K A P P V N R P P E K R Q R V P S A Y N R F I K E E I Q R I K A G N P D I S H R E A F S A A A K N W
gm001387_Glyma0    T M R G G P E E T P K P P S A N R P P E K R Q R V P S A Y N R F I K D E I Q R I K A G N P D I S H R E A F S A A A K N W
 
AT2G45190.1     A H F P H I H F G L V P D N Q P V K K T N M P Q Q E G E D N M V M K E G F Y A P A A A N V G V T P Y
gm001387_Glyma0    A H F P H I H F G L M P D N Q P V K K A N V - R Q E A E D - V L M K D G F F A P - - A N V G V S P Y
 
0