fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G46410.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029528 not found in 79aa AT5G53200.1 1st_not 0.524590163 II
Pt016529 not found in 88aa AT2G46410.1 1st_1st 0.617486338 Ia
Pt039931 not found in 92aa AT5G53200.1 not_not 0.606557377 III
Pt023384 not found in 97aa AT5G53200.1 not_not 0.584699453 III
Pt026754 not found in 95aa AT5G53200.1 not_not 0.551912568 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G46410.1     MFRSDKAEKMD---KRRRRQSKAKASCSE-EVSSIEWEAVKMSEEEEDLISRMYKLVGDR
pt023384_POPTR_ ------MESMDRRRRRRRKQAKINNSESE-EVSSIEWEFIDMSEQEEDLIYRMYRLVGER
gm029528_Glyma1 ---------MS------------TTATTTSEVSSNEWKVIHMSEQEEDLIRRMYKLVGDK
pt016529_POPTR_ ---------MD---RRRKKQAKTTSCCSEQEVSSIEWEFINMSEQEEDLIYRMHNLVGDR
pt039931_POPTR_ ---------MD---RRRRKQAKTTTHCSDQEVSSIEWEFINMSEQEEDLIYRMYKLVGDR
pt026754_POPTR_ ------MESMN--RRRRRKQPKINSSESE-EVSSIEWEFINMSEQEEDLIYRMHRLVGER
                         *.            .   :  **** **: :.***:***** **:.***::

AT2G46410.1     WELIAGRIPGRTPEEIERYWLMKHGVVFANRRRDFFRK------
pt023384_POPTR_ WDLIAGRIPGRKAEEIERFWIMKHREGFAEKRRLHSKAKSKTYR
gm029528_Glyma1 WNLIAGRIPSRKAEEIERFWIMRHGDAFSVKRHRSKAQDS----
pt016529_POPTR_ WALIAGRIPGRKAEEIERFWLMRHGEGFASRRREQKRCHS----
pt039931_POPTR_ WALIAGRIPGRKAEEIERYWIMRHCEGFASRRKEQKRDVIPNTS
pt026754_POPTR_ WDLIAGRIPGRKAEEIERFWIMKHREGFAENGKLYNEVKSRTSS
                * *******.*..*****:*:*:*   *: . :
BoxShade v3.31 C (beta, 970507) Output
AT2G46410.1     M F R S D K A E K M D - - - K R R R R Q S K A K A S C S E - E V S S I E W E A V K M S E E E E D L I S R M Y K L V G D R
pt023384_POPTR_    - - - - - - M E S M D R R R R R R R K Q A K I N N S E S E - E V S S I E W E F I D M S E Q E E D L I Y R M Y R L V G E R
gm029528_Glyma1    - - - - - - - - - M S - - - - - - - - - - - - T T A T T T S E V S S N E W K V I H M S E Q E E D L I R R M Y K L V G D K
pt016529_POPTR_    - - - - - - - - - M D - - - R R R K K Q A K T T S C C S E Q E V S S I E W E F I N M S E Q E E D L I Y R M H N L V G D R
pt039931_POPTR_    - - - - - - - - - M D - - - R R R R K Q A K T T T H C S D Q E V S S I E W E F I N M S E Q E E D L I Y R M Y K L V G D R
pt026754_POPTR_    - - - - - - M E S M N - - R R R R R K Q P K I N S S E S E - E V S S I E W E F I N M S E Q E E D L I Y R M H R L V G E R
 
AT2G46410.1     W E L I A G R I P G R T P E E I E R Y W L M K H G V V F A N R R R D F F R K - - - - - -
pt023384_POPTR_    W D L I A G R I P G R K A E E I E R F W I M K H R E G F A E K R R L H S K A K S K T Y R
gm029528_Glyma1    W N L I A G R I P S R K A E E I E R F W I M R H G D A F S V K R H R S K A Q D S - - - -
pt016529_POPTR_    W A L I A G R I P G R K A E E I E R F W L M R H G E G F A S R R R E Q K R C H S - - - -
pt039931_POPTR_    W A L I A G R I P G R K A E E I E R Y W I M R H C E G F A S R R K E Q K R D V I P N T S
pt026754_POPTR_    W D L I A G R I P G R K A E E I E R F W I M K H R E G F A E N G K L Y N E V K S R T S S
 
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