fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT2G46990.1 RNLSTDLRLGLSFGTS at 32/175 in AT2G46990.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm007900 QQLPTDLRLGLGISAT in 35/180 AT2G46990.1 not_1st 0.435087719 II
Pt016750 KDLSTDLRLGLSISTS in 37/175 AT3G62100.1 1st_not 0.470175438 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT2G46990.1     MGRGRSSSSSSIESSSKSN--PFGASSSTR---NLSTDLRLGLSFGTSSGTQYFNGGYG-
gm007900_Glyma0 MGKPASSSSSSISSTTNRRLLISTASSLTQ---QLPTDLRLGLGI---SATQHVASSISR
pt016750_POPTR_ MGRGATSSSSSSFESSNYP-SVSSKSSLSQLKKDLSTDLRLGLSI---STSQQENPSTPS
                **:  :*****  .:::        ** ::   :*.*******.:   * :*    .   

AT2G46990.1     ------Y-SVAAPAVEDAEYVAAVEEEEENECNS-VGSFYVKVNMEGVPIGRKIDLMSLN
gm007900_Glyma0 GQ----WQQPHHPFVNN-NYSQAAASAEVNDCSNDHSSFFVKVYMEGIPIGRKLNILAHG
pt016750_POPTR_ DQQLSDW-PPIKPFL------RKALASEENECSS--ATFFVKVYMEGIPIGRKLNLLAHD
                      :     * :        .   * *:*..  .:*:*** ***:*****::::: .

AT2G46990.1     GYRDLIRTLDFMFNASILW-AEEEDMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRR
gm007900_Glyma0 GYYELVRTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKR
pt016750_POPTR_ GYHDLIQTLDQMFNTSILW-PEMDIEHSGQCHVLTYEDKEGDWLIVGDVPWEMFLPSVRR
                ** :*::**: **:::*** .* :     :.***** *:*** ::**********.:*:*

AT2G46990.1     LKISRANYHY-
gm007900_Glyma0 LKITRVDTFGC
pt016750_POPTR_ LKITRADSL--
                ***:*.:
BoxShade v3.31 C (beta, 970507) Output
AT2G46990.1     M G R G R S S S S S S I E S S S K S N - - P F G A S S S T R - - - N L S T D L R L G L S F G T S S G T Q Y F N G G Y G -
gm007900_Glyma0    M G K P A S S S S S S I S S T T N R R L L I S T A S S L T Q - - - Q L P T D L R L G L G I - - - S A T Q H V A S S I S R
pt016750_POPTR_    M G R G A T S S S S S S F E S S N Y P - S V S S K S S L S Q L K K D L S T D L R L G L S I - - - S T S Q Q E N P S T P S
 
AT2G46990.1     - - - - - - Y - S V A A P A V E D A E Y V A A V E E E E E N E C N S - V G S F Y V K V N M E G V P I G R K I D L M S L N
gm007900_Glyma0    G Q - - - - W Q Q P H H P F V N N - N Y S Q A A A S A E V N D C S N D H S S F F V K V Y M E G I P I G R K L N I L A H G
pt016750_POPTR_    D Q Q L S D W - P P I K P F L - - - - - - R K A L A S E E N E C S S - - A T F F V K V Y M E G I P I G R K L N L L A H D
 
AT2G46990.1     G Y R D L I R T L D F M F N A S I L W - A E E E D M C N E K S H V L T Y A D K E G D W M M V G D V P W E M F L S T V R R
gm007900_Glyma0    G Y Y E L V R T L E H M F D T T I L W G T E M N G V Q P E R C H V L T Y E D E E G D L V M V G D V P W E M F L S T V K R
pt016750_POPTR_    G Y H D L I Q T L D Q M F N T S I L W - P E M D I E H S G Q C H V L T Y E D K E G D W L I V G D V P W E M F L P S V R R
 
AT2G46990.1     L K I S R A N Y H Y -
gm007900_Glyma0    L K I T R V D T F G C
pt016750_POPTR_    L K I T R A D S L - -
 
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